barSeed - Barley Seed Development Database

Probe CUST_41984_PI390587928

Source Contig U35_6705

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41984_PI390587928	Hv_44K_v2	ACTGTAAACTCTCGGGACACGTGTCCATCATTTTTAGTGAAATTTTGTCGATTCAAAAAA	1345	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.583	1.511	1.227	0.896	0.393	0.403
Raw	1876.170	2808.493	1976.513	2255.722	350.057	389.678

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4010.1	3285	5e-22	3066 - 3123	98	57 / 58	plus
Harvest35	U35_6705	1415	3e-25	1346 - 1405	100	60 / 60	plus

Contig Sequence (1415 bp)

>U35_6705 1415 Hv_44K_v2
GAGAGCCTTGGGTCGTTGGAAACAACCCGCGCTGTTTATGAGAGAATATTAGATTTAAGA
ATTGCAACTCCTCAAATAATTCTTAATTATGCGTTCCTTCTTGAGGAGAACAAGTATTTC
GAAGATGCATTTAAAGTGTATGAAAGAGGTGTAAAAATATTCAAGTATCCCCATGTTAAG
GATATTTGGGTGACCTACCTCACAAAGTTTGTAACAAGGTACCAGCGAAGCAAGTTAGAG
CGGGCAAGAGAGCTGTTCACGGAAGCTGTCGAAAAGGCTCCGCCGCATGAAAAGAAGGCC
TTATATTTGCAATATGCTAAACTGGAAGAGGACTATGGCCTCGCAAAACGTGCCATGAAT
GTATATGATGAAGCTGTAAGGGCTGTTCCCAACACTGAAAAGATGAGTATGTATGAAATA
TACATTGCACGTGCTGCTGAACTTTTCGGCGTTCCAAGGACCAGACAAATATACGAGCAA
GCTATAGAATCTGGTCTCCCAGACAAAGATGTTATGGTGATGTGCATGAAGTTTGCGGAA
CTTGAAAGAAATCTTGGAGAAATCGACCGTTCCCGGGCTATTTATATCCACGCCTCCAAC
TATGCTGATCCAAATGCTCATCCAGAGTTCTGGAAGAAATGGAACGACTTCGAGATCCAA
CACGGTAATGAAGATACATTCAGGGAGATGCTTCGCATCAAGCGTACAGTGGCTGCTAGC
CGCAGTCAGACTCATTTCATCCTTCCGGAGTACCTGATGCAAAGGGACCAGAGGCTAAAC
ATGGACGAGGCGGTCGACACTCTGACACGTGCCGGTGTCCCGCAGGATGAGATGGCGGCC
TTAGAAAGGCAGCTAGCTTCTGGACCATCCCCAGCGCCAGCAGCAGCACCGAGCACCAGC
ACGACTCCTGCTAACAGAATGATGAACTTTGTCAGTGCTGGAGTAGAGGCGCGGGCCGAG
AGCAGCACACAACAGACCACTGCTAACAACGAGGACATTGAGCTGCCTGATGAAGAGAGT
GACGAGGAGGACGATGTCCAGATCGCGGAGAGGGCTGTCCCTGAAGCCGTGTTTGGCGAG
CTTGGCAAGAGAGCCGCGGAGAGCAGGGAGGAAAGCTCTAATGCTCAAGAGAACAACGAG
CAGCAGCTGGGCGCTCTCGAGAGAATTAAGCGAAGGCGTCAATAGGGTCAAAGATTGCGC
TCCAAGCACGCCATTGCCTGTCGTTGGGCCTAATGATGTTGTAGCTGTTACGTGTAAACA
TGTTCTTGCTAGCGTTTGCTCTTCTTGTACAAGGATTTTGCAGGAGTTAATCTGGTGTTG
ATCCGCAGCGTTTTTCTGTGTACAAACTGTAAACTCTCGGGACACGTGTCCATCATTTTT
AGTGAAATTTTGTCGATTCAAAAAAAAAAAAAAAA

Homology of Contig U35_6705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44970.1	932	0.0	protein\|XPA-binding protein 2, putative, expressed
Brachypodium v1_2	Bradi1g19690.1	938	0.0
Arabidopsis v10	AT5G28740.1	917	2e-154	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:10780774-10783772 FORWARD LENGTH=917