barSeed - Barley Seed Development Database

Probe CUST_41982_PI390587928

Source Contig U35_6707

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41982_PI390587928	Hv_44K_v2	CGTAATTTCGATTGATATTGCCAGAGACATCGCATCCCGTCACGCAAATCAGTCACTAAG	28	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.980	1.302	1.523	1.691	0.496	0.344
Raw	19.252	38.987	39.286	69.787	6.732	4.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359945	2604	2e-24	1803 - 1862	100	60 / 60	plus	ABC16126
MLOC	MLOC_53574.1	2655	2e-24	1905 - 1964	100	60 / 60	plus	ABC16126
MLOC	MLOC_53574.2	2640	2e-24	1584 - 1643	100	60 / 60	plus	ABC16126
JLOC1	JLOC1_34438.3	1980	8e-25	1070 - 1129	100	60 / 60	plus
JLOC1	JLOC1_34438.2	2628	8e-25	1718 - 1777	100	60 / 60	plus
JLOC1	JLOC1_34438.1	2401	8e-25	1491 - 1550	100	60 / 60	plus
Harvest21	ABC16126	823	3e-25	29 - 88	100	60 / 60	plus	ABC16126
Harvest35	U35_6707	823	3e-25	29 - 88	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_6707 823 Hv_44K_v2
CGGCACGAAGGCCAATGGGGCCCGGCTACGTAATTTCGATTGATATTGCCAGAGACATCG
CATCCCGTCACGCAAATCAGTCACTAAGGCTGTTCAAGATGGAGGATGTGAGCATGGGCA
TGTGGGTTGAAGACTACAACACTACCACCATTGCCGCCCCGGTGCAGTACATCCACAGCT
GGAAGTTCTGCCAGTACGGCTGCGTGGACAACTACTTCACGGCGCACTACCAGTCCCCCA
GGCAGATGCTGTGCCTCTGGGACAAACTGTCGTTAGGCCGCGCGCAATGCTGCAACTACA
GATGACACGGCGCTCATCCATGACCGCTTCACGAGGGCAACCGACGACTTAACTAGGCGG
CATCCGCCAGTCCCACTGCCGTAGTGTCATTTTAGAAGAACACCAGGGACCAGGCCAGCA
TGACAACCACCAGACCGCCCGGGTGTCCATCATCCTTAACTCACAGTTCCCTACATCTGC
TCCATCGGCTGACGGCGGCGGAGACCATGGACCTCACCATTGTCTGCTCCTCAGTTGTAC
ACAAACAAGATACGCCATCAATGGTGCTTCACCTCCTGGAGCTCATACATTTGGATATGT
GGATGGATGAATCTACTTGTAGTGGAAGACGCTATCTGTTGGGTTCATTGATTGAAGATG
ACTATGCAAACACGAGGAGCCAAAATTTTCCGCGTGTAATGTACAGGGGCGAGTAATTTT
GTACTCCGGTTTGTAGGGTTGTTGTGTCCCTTGGCTTGCAGAGGGAGCTGATGTCTCGTT
GATACTGAATTGGTGTCGTGTTCTATAGGATCGTAATATAAAA

Homology of Contig U35_6707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g01717.1	670	2e-56
Arabidopsis v10	None