barSeed - Barley Seed Development Database

Probe CUST_41975_PI390587928

Source Contig U35_6714

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41975_PI390587928	Hv_44K_v2	AAGTCATCCTCGTCACCCTCAAGAGCATACACGAGAAATCGCAGCGCGGCCGTCTCAACA	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370608	1956	2e-24	1310 - 1369	100	60 / 60	plus	ABC39707 ABC41237
MLOC	MLOC_2378.2	929	2e-24	382 - 441	100	60 / 60	minus	None
MLOC	MLOC_2378.3	1392	2e-24	311 - 370	100	60 / 60	minus	None
MLOC	MLOC_2378.1	1304	2e-24	384 - 443	100	60 / 60	minus	None
MLOC	MLOC_2378.4	1236	2e-24	311 - 370	100	60 / 60	minus	None
JLOC1	JLOC1_1430.1	1305	8e-25	862 - 921	100	60 / 60	plus
Harvest21	ABC15053	775	3e-25	23 - 82	100	60 / 60	plus
Harvest35	U35_6714	775	3e-25	23 - 82	100	60 / 60	plus

Contig Sequence (775 bp)

>U35_6714 775 Hv_44K_v2
GACGGCTTCTACAACTTCCTCAAAGTCATCCTCGTCACCCTCAAGAGCATACACGAGAAA
TCGCAGCGCGGCCGTCTCAACAGAGTGGCGGATGAGGACTCGGTGGCCATCGACGACCTG
CAGCGCAACGAGGTGTTCAACAGGGACAACATCCCGGCGTGGGTGGCCTACGCCGGGTAC
GCCCTGCTCAGCGCGGTGGCGGTGGTGGCCATCCCGCTCATGTTCCGGGAGGTGAAGTGG
TACTTCGTGGTGATCGCCTACCTGCTGGCGCCGGCGCTCGGGTTCTGCAACGCCTACGGC
ACCGGGCTCACCGACATGAACATGGGGTACAACTACGGCAAGGTGGCGCTGTTCGTGTTC
GCGGCGTGGGCGGGGAAGGACAACGGCGTGGTGGCCGGGCTGGTCACCTGCGGGCTGGTG
AAGCAGCTGGTGCTCGTCTCGGCCGACCTCATGCACGACTTCAAGACGGCGCACCTGACG
CTGACGTCGCCGCGGTCGATGGTGGTCGGGCAGGCCGTGGGCACGCTCATGGGCTGCGTC
GTGGCGCCGCTCACCTTCTTCCTCTTCTACGAGGCCTTCGACGTGGGCAACCCGGACGGG
TACTGGAAGGCGCCCTACGCGCTCATCTACCGCAACATGGCCATCCTCGGCGTGGAGGGC
TTCTCGGCGCTGCCGAGGCACTGCCTGCAGCTCTGCGCCGCCTTCTTCGCCTTCGCCGTG
CTGGCCAACCTGGCGAGGGACTTCTTGCCGCGGCGGTTCGGGAGGTTCGTGCCGC

Homology of Contig U35_6714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45900.1	676	4e-147	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g17230.1	675	2e-157
Arabidopsis v10	AT5G53550.1	675	5e-110	\| Symbols: YSL3, ATYSL3 \| YELLOW STRIPE like 3 \| chr5:21756081-21758776 FORWARD LENGTH=675