barSeed - Barley Seed Development Database

Probe CUST_41973_PI390587928

Source Contig U35_6716

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41973_PI390587928	Hv_44K_v2	GTACCATTGCAGTTTTGTTGATGACCTGTAGAAACCAGTGAATGAATTGAATTTGCTTAA	1037	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.741	1.971	1.256	0.727	0.240	0.264
Raw	4133.787	7394.177	4101.377	3757.743	429.649	518.449

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37557.1	880	6e-24	69 - 127	100	59 / 59	minus	ABC17789
JLOC1	JLOC1_24323.1	666	3e-24	37 - 95	100	59 / 59	minus
Harvest21	ABC17789	1103	5e-23	1037 - 1096	98	59 / 60	plus	ABC17789
Harvest35	U35_6716	1112	3e-25	1038 - 1097	100	60 / 60	plus

Contig Sequence (1112 bp)

>U35_6716 1112 Hv_44K_v2
GTAATTCTAGCTCTCTGGTATCCAGTATTTTGCTTCAGTAGAGAAGAGGAAACAAGAGAA
GTTGGATGTCACATCATCGTTCCTTGTCCAACCAAGCAGGCTATTCCTAATTGCTACTGC
TTTCTTGAAACAGCTGAGGATGGAGCTAAGTGATACTACGGAAAATAAGAAAATTGTACA
CAATCTTGCATACTCAATCTGTAACTTGCATGTGTTGGTTAAGCAAACTACTTCATCGCA
TAAGTTTTGGTCTAGCCTTGGTTCTTGTGATCATGGTGCCTTCCTCGAGGGTTTTGAATT
GCTTGGTTCAAGAAAAGCAAAGAACACGTTTCTCCTCTGCACTGCCTCTTGTAGTGATAT
AGCTGGATCTGGCCTTGACAGCTGTGAAGAACTTGCATCTTTCTTTGTTTCTTCTCTCCT
GAAGAAAATGGGAAAAATTGCAATGCAGATGGAGGACACACATATGAAGATCGTGTTCAG
TTGTTTCAGTATGATTTCACTAAAACTAAAAACTGAAGCTGAATTTTCAACCTATGCTGT
TCACATGTTGGCCCCATTGTACAAAGTTGCTGAAGGATTTGCTGGGAAAGTCATCACTGA
TGAAGTTAAGCAGTCAGCAGAGGTGACCAGGGACAAACTACGTGATCTGATTGGTGTTGA
GAAGTTTGTGGAAATTTACAACAGTGTTCGTAAGGACCTGAAAGCAAAGAGGGAGAGCAG
AAAGCAGGCTGAGAAGCTTGTTGCAGCCGTCGACCCAGCGCGGCACGCCAAGAGGAAGTT
GCGAATGTCTGCCAAGCACCGAGAACACAAGAAGCGGAAGATAACAGCGTTGAAGATGGG
AAGGTGGATGAGGTAGTGTTTGTTGGTGCTTAGCTTCAAGCCGAAGCAAGTTGTACAGCG
TTCACTTCTGTGAGGCATGTTGTTCGGCTATTGGACCTTGAAAATAGCTTACCACACGTT
CCATGTGGTGTTTGAGACGGCTGGCAGAAAATTTTGTATGCTAGATGTATACATGCATAT
ATTGATCAAGTTATGCTGTACCATTGCAGTTTTGTTGATGACCTGTAGAAACCAGTGAAT
GAATTGAATTTGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6716 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40250.1	2406	4e-118	protein\|down-regulated in metastasis family protein, expressed
Brachypodium v1_2	Bradi2g42017.1	2413	7e-139
Arabidopsis v10	AT4G30990.2	2620	1e-55	ARM repeat superfamily protein \| chr4:15084456-15097860 FORWARD LENGTH=2620