barSeed - Barley Seed Development Database

Probe CUST_41972_PI390587928

Source Contig U35_6717

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41972_PI390587928	Hv_44K_v2	GCACCACTTGTGTTTACTCTGTCAGAGGTTCCATGCTATTTTAACAGATTGGTAATGTAA	1721	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.408	1.636	1.058	0.869	0.341	0.372
Raw	645.258	1210.979	659.680	874.891	118.388	141.352

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15523.1	1013	3e-22	79 - 137	98	59 / 60	minus	ABC14642
JLOC1	JLOC1_10653.1	970	1e-22	106 - 164	98	59 / 60	minus
Harvest21	ABC14642	1360	3e-25	1286 - 1345	100	60 / 60	plus	ABC14642
Harvest35	U35_6717	1796	3e-25	1722 - 1781	100	60 / 60	plus

Contig Sequence (1796 bp)

>U35_6717 1796 Hv_44K_v2
CTCCGCTCCACCAAACCCACCGTTGGCGCACGGCAGATCCAAGCCAGCAGCAGTTACCCG
CCGCTCCCACCCATCGCGCCGCCACCCTCCCTCCCCTTCCTCCCCGAGCACTGCCGCCGG
CCCAACCACAACACCACCCTGGCCTCCACCGAAGATTGTCATCATCGGCATCACATCATC
ATCGGCGAGCGGAGGTCGTCGTCGCCCAGTAGCAGGAGCAGGAGCGTCGTGCGGATGTCG
AAGGGGCCCGGCGGGTTCTGCTGCGGCGGCATGAGGTCGCGGGCAGCGGATCTTGCGGGC
GGCGTCGAGATGGGCAGGCCCAGCGCCGCGTGCGCTACAGCCTCACTGTCGTCACTGGTG
GATCTCTTCCGGAGCCCGCGCTATGGCCGCGTGCGCGCCACGGCCTCAGGTGCACGATTC
ANCGCGGAGGAAGGGGCGGAGAAAGGCAAATCTCCCAATCCGTGGGAGCCATCGGCTGGC
TCCGATTCCGCGCCAGCGGGGTCTCTAGCGGGGAGCATTCTTCCCCGCGGCCCGTCTGCG
CCGTCCGCCGAGCTACACATCCCCCGGGAGGGCTGGGTCTTGATTCGGGATGCCAGATGT
ATGAACCAAAGCCATTTTTGAGCACTGGGTCAGCTCACGGCACTCCGGTTTCTCACGATC
AACAAATCGGACCAACTGCCAACAATGCAGTATCTAATATTGGTGGAAATAGCTCAAACG
ACAGCTTTGCCACCAGACAGCGTTTACGGTGGACAGATGAGCTTCATGGACGTTTTGTTG
AGGCTGTAGCACAGCTTGGTGGACCCGACAGGGCTACTCCTAAGGGAATTCTTAGAACAA
TGGGTGTTCAAGGGTTGACCATTTATCATGTTAAAAGTCATCTGCAGAAATATCGGCTTG
CAAAATACATCCCAGACACCACAGCTAGCGGCGACAAGCCGGAGAAGAAAGATTTAGGAA
GTCTGCTTGAAGGAATCGAAAGCTCTCCCAGGGGAACGGAGACAAGCCAGGTTCTAAAAT
TGCAGGTGGAGGTGCAGAAGCGTCTACGTGAACAATTAGAGGTACAAAGGCAGCTACAGC
TCAGAATAGAAGCCCAAGGCAAGTATCTCCAGAAGATCATGGAGGAGCAGCAGCGCCTGA
CTGGTGTGCTGTGCGAATCAGGTAAGATGAACGCCCTCGCCCTGGCTGAGGAGGAGCTCC
ACCATGATTTCAGCAACACTGAGCCATCGACCCCAGTGCTGACCTCGGAGCCCCCATTCC
GGGACAAGGCCGTTACTGCGAGTTGTAATCTGGAAGGAACAGACGAGCTGCTCAAGGTTC
TTTCTTCACATGACGACTGCCTCTCCTTGGACCGTGAGCTTTCGACACCGGATTCCAGTT
GTGGTGCCGGTTACCTCCTAAACAGCCCCAGAGATAGCAAGAGGGCTCGTGTCAGCAACA
ACCTTGGCGACGGAAACAACGAGTTTGCACTTCCTCACATCACTCCGGAGTCGAGCTCGG
GTTCCGATTTGCAACTGAGAAGCTCGGTGTTCTCATCCGGCACAGGGCGATCTGATTCAT
CGGTGGCTCTCGATGCCAATGAAGATGGTTTTACCAATGGCTCAGGCAGTGACGTTTGAT
TAGTATTCGCCAATTGTCTCTATCAGTCACTAGAGCTATTTGTCTGGAAGAGAGTAGATG
ACGTAGATGACGTGGACCATGTCTTTGATGTGTATTGTATTGCACCACTTGTGTTTACTC
TGTCAGAGGTTCCATGCTATTTTAACAGATTGGTAATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6717 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40710.1	330	3e-115	protein\|Myb-like DNA-binding domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g36236.1	329	2e-128
Arabidopsis v10	AT2G01060.1	286	4e-62	myb-like HTH transcriptional regulator family protein \| chr2:73456-74902 REVERSE LENGTH=286