barSeed - Barley Seed Development Database

Probe CUST_41968_PI390587928

Source Contig U35_6721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41968_PI390587928	Hv_44K_v2	AACATACTTGTACTAGCCACTGTAAAGGACGAGGCGGTGGAAGAGCTAGGTGATGAAAAT	282	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370086	4844	2e-24	3636 - 3695	100	60 / 60	minus	ABC16584
MLOC	MLOC_55774.2	5732	2e-24	3621 - 3680	100	60 / 60	minus	ABC16584 ABC16998
MLOC	MLOC_55774.1	4952	2e-24	3627 - 3686	100	60 / 60	minus	ABC16584
JLOC1	JLOC1_36016.2	4748	8e-25	3301 - 3360	100	60 / 60	minus
JLOC1	JLOC1_36016.1	4897	8e-25	3450 - 3509	100	60 / 60	minus
Harvest35	U35_6721	1460	3e-25	283 - 342	100	60 / 60	minus

Contig Sequence (1460 bp)

>U35_6721 1460 Hv_44K_v2
CACGCGTCCGGGAGTGTCCTATTGGAGTAGGAGCTCCTCATCTGGCACTGGTGTCTCGTC
GTTTGGAGCAGGGGTTTCATCATCTGGACCTGGGACTGTATCTTTTGGAGCGTCGCTTTC
CTCATCTGGACCTGGGACTATGGCTTTTGGAGGCGCACCTTCCTCATCTGGACCTGGAAC
AGTGTCTTTTGGCGTGACAACTTCCTCTTCCGGGCCTGTGTTTGGTAATTCACCGTTTGG
ATCTGGAGCTGCTGCCTTCTCTGGGTCTGGAAGTGGGTTTGCATTTTCATCACCTAGCTC
TTCCACCGCCTCGTCCTTTACAGTGGCTAGTACAAGTATGTTCAGCAGTAGCTCCACAGC
CTCATCGTCCGCTGCTTTGAGCAACCCTTTTGGTTCAGCTTCGTCCTCTCCCAGCATGTT
TACATTTGGACAATCAGCAGCATCTTCAGGGGGTGCGTTTTCATTTGGAGCACAGTCAGC
TCCAGCTTTCTCATCGCAAGCTCCTCCAGTTTATTCGTTTACTTCGGCGAGTGCAAGCAT
GAATTTGTCTACACCACAGCCTGCATTTGGGATGACAAATGCCAACACAGGCTTCGGAAT
GGGATCTCCTGGAAATGATCAGATGAGCATGGAGGACAGCATGGCTGATGACACCAACCA
AGCAGCACCCCAGCAAGTGTCTGCACCAGTGTTTGGTTCTTCGGTATTTGGGCAGCCAGG
TGGTTCACCCGCGGCTCCAGTATTCGGGCAACCAGCTGGTTCGGCCGCCGCTCCAGTATT
CGGGCAGCCGGCTAGTTCACCCGCCGCTCCGGTATTTGGTGCTCCAGCTGCCCAGCCTGC
CGGAGCTTTCCAGTTTGGCGGCCAACAAGGGTCGGTGCAGCAGAACCCGTCATTTCCAAC
TGGCGGTAGCTTAGAGTTTCAGGGCGGAAACTTCTCGTTGGGCAGCATGGGCGGCGACAA
GTCCAACAGGCGGATCATCAAGGCCAAGAGGACACAGAAGAAAAGGTAGCCCCGCTGTTC
AGTTTTGCATTACATGGTGGCTATTTTCGATGGTGGAATGTCCGGGAACGTCATCTGGAT
GGGAACTCTGGAGACGGATGATTTCGTGCGGTAATACACATGTTCCAGCATGGAGGCTGT
TCCACCCACAGGACATATATCTATCTGGAGGCTGTCATGCAAACCTCAAAGGTCAGTGTA
GAGTAGCCACTCAATTATATTTTCTTGCTTGCTTGGTCGGTCAGGTCAGTCGAAGGGTGA
AAAAGCCCCCGGTGGGTGGCATATGTTGTTAGTAGTATGCTTGTGCTCTTGGGGTGTAAA
ATGGAACAAACAAGAGTGTATCTGAAGGTGTAATTTTTGTCCCAGTTTCTTATTTGTGCC
CGTTATAGTTGTCTCGCGCCCGAGGTGTATCTGAAGGTGTATTATTCATTTTGTTCACAT
CCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None