barSeed - Barley Seed Development Database

Probe CUST_41965_PI390587928

Source Contig U35_6725

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41965_PI390587928	Hv_44K_v2	TCCTGAGATAATCATGTGTTCATCAGCTAGCAAATTTGCTAGAGAGAAATAATCCAGAAA	408	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.018	0.396	2.038	3.090	1.266	1.526
Raw	65.523	3445.573	15247.167	31872.633	5498.467	7055.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC15742	483	3e-25	381 - 440	100	60 / 60	plus
Harvest35	U35_6725	511	3e-25	409 - 468	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_6725 511 Hv_44K_v2
GGGGGTGATCAAGGCAACAGTCTCACTTGAAAGAAATACCACACATCACTTTTGATCCTT
AGTAATGATGGCCAAATACACGAGGAATGGTGTCCAAGCAGTTATACTAGTTTCTTTTGT
CCTTGTGGTGTGCTTTGCCTGTCTTGGATGCACAAACGGTGAAAGCATAAACGGCAAGAG
GAGCAACGGGATGATCGAAGTGAGCCAAGTAGTCCGCCCCCCTTGTTACAAAGACCATCA
CCAGCCCCCAGAATTGCAATATTGTTGTCACACGGATAAGATATGTTGGATAGACCTTGG
GGAATGCTTCACAAACTGCCCGTGCAAGATCAATTGCCCACTGCCACCAGCAACACAGTA
GTTGTGTCATCTCTCATTCTTTGGCTTAATAAATCCCAACCTTATGGGTCCTGAGATAAT
CATGTGTTCATCAGCTAGCAAATTTGCTAGAGAGAAATAATCCAGAAATTACATATGCGG
TTTAAATATTTAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None