- Probe CUST_41964_PI390587928
- Source Contig U35_6726
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41964_PI390587928 | Hv_44K_v2 | GACCCTGAGATAATCATGTGTTGATCAGCTAGCAAATTTGCTAGAGAAAAATAATCCAGA | 379 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.037 | 0.468 | 2.171 | 1.746 | 0.977 | 1.939 |
| Raw | 3.814 | 113.556 | 457.540 | 503.791 | 107.789 | 239.014 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_12312.1 | 525 | 8e-25 | 416 - 475 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15743 | 466 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | ABC15743 |
| Harvest35 | U35_6726 | 466 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus |
Contig Sequence (466 bp)
>U35_6726 466 Hv_44K_v2 GGAAAGAAATACCACACATCACTTTTGATCCTTAGTAATGATGGCCAAACACACGAGGAA TGGTGTCCAAGCAGTTATACTAGTTTCTTTTGTCCTTGTGGTGTGCTTTTCCTGTCTGGG ATGCACAAATGGTGAAAGCATAAACGGCAAGAGGAGCAACGGGATGATCGAAGTGAGCCA AGTAGTCCGCCCCCCTTGTTACAAAGACCATCACCAGCCCCCAGAATTGCAATATTGTTG TCACACGGATAAGATATGTTGGATAGACCTTGGGGAATGCTTCACAAACTGCCCGTGCAA GATCAATTGCCCACTGCCACCAGCAGCACAGTAGTTGTGTCATCTCTCATTCTTTGGCTT AATAAATCCCAACCTTATGGACCCTGAGATAATCATGTGTTGATCAGCTAGCAAATTTGC TAGAGAAAAATAATCCAGAAATTACATATGCGGTTTAAAAAAAAAA
Homology of Contig U35_6726 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |