barSeed - Barley Seed Development Database

Probe CUST_41961_PI390587928

Source Contig U35_6729

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41961_PI390587928	Hv_44K_v2	TTGGCCTTCTTCTTCTTAAACAACTTCTTGCGCCTGGCCGATCCGGGGGTGGACTTGGAC	139	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371369	1969	2e-24	160 - 219	100	60 / 60	minus	ABC06080 ABC06485
MLOC	MLOC_50863.1	2763	2e-24	1997 - 2056	100	60 / 60	plus	ABC06080
MLOC	MLOC_50863.2	2500	2e-24	1997 - 2056	100	60 / 60	plus	ABC06080
JLOC1	JLOC1_32443.1	2667	8e-25	283 - 342	100	60 / 60	minus
JLOC1	JLOC1_32444.1	2875	8e-25	2326 - 2385	100	60 / 60	plus
Harvest21	ABC15090	706	3e-25	126 - 185	100	60 / 60	minus
Harvest21	ABC15089	444	3e-25	140 - 199	100	60 / 60	minus
Harvest35	U35_6729	720	3e-25	140 - 199	100	60 / 60	minus

Contig Sequence (720 bp)

>U35_6729 720 Hv_44K_v2
CGTCACATCCCCCTGACAGTCTTCCCCTTTCTCTCGCTACCGAAGCCATGGTGAAGGAGG
CGCCCACCACCCCGAGCGCCAAGGGCAAGGGCAAGGGCGCCGCGTCCGCCTCCGCCTCCG
CCTCCGCGCCGACGCTGCCGTCCAAGTCCACCCCCGGATCGGCCAGGCGCAAGAAGTTGT
TTAAGAAGAAGAAGGCCAAGGCCGATCCGGAGAAGCAAAAGGCGGCCGCCGCGGCTCAAG
TCGCGGCCTCCGCCGACGCACCTGCTTCCGGCCCTACGCCTGTGGTTCCTGCTTCGGTGC
CTACGCTGGTGATTCCCGCTCCGGCCGACGCCAACACTTCGGCCGCCCTTGTGGTCGCCG
AGAACGGTGGCGCTGATGGGAAGATGGTCGCCAAGACCAACGGTGATGGCGATGAGACCA
TCGCCAAGGACAAGGGTGATGGCAGTAAGTCCGTTGCCGAGAACAACGGTGATGGCAGTA
AGTCGGTCGCCGAGAACAAGGGTGATGGCAGTAAGACCGTCGCCGAGAACAAGGGTGATG
GCAGTAAGACCGTCGCCGAGAACAAGGGTGCTGACAGGAAGACCGTCGCCGAGAACAAGG
GTGCTGACAGGAAGACCGTCGCCGGGAACAACAGTGCTGACAGGAAGATGGGCACTGGGA
ACAACAGTGCTGACAGGAAGAGGGGCAGGAAGGATAAGATGAAAGGGAGGGTTAATGGGG

Homology of Contig U35_6729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None