barSeed - Barley Seed Development Database

Probe CUST_41959_PI390587928

Source Contig U35_6731

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41959_PI390587928	Hv_44K_v2	TATTTGATTACACATTCTGGGGCAGTGCTCAATCTTATACCCCATGAACTGACTACGAAA	1082	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.267	2.250	1.069	0.816	0.205	0.197
Raw	136.228	211.967	88.072	102.419	9.215	9.826

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13855.1	1171	1e-22	971 - 1029	98	58 / 59	plus
Harvest21	ABC15511	1158	2e-22	1083 - 1144	97	60 / 62	plus	ABC15511
Harvest35	U35_6731	1156	3e-25	1083 - 1142	100	60 / 60	plus

Contig Sequence (1156 bp)

>U35_6731 1156 Hv_44K_v2
GCCGGCGCGCGAGATCCCGGGGCCTCAGCCGTCGGCCGACGACGCCCCGTTGCCGGCGCG
CAAGAGCCCGGGGCCCCAGACGTCGGCGGACGACGCCCCGTTGCCGGCGCGCGAGAGCCC
GGGGCCTCAGCCGTCGGCGGACGAGGCCCCGTTGCCGGCCGGGTTCATCTTCGTGTGCGA
CGGCGCGACCACGCCCGAGTGCTTCAGGTACAGGGTGCTGGGCCTGCCGCGGCGGAAGCT
GGGCGCCGTCTCCCGGATCAGGCGCGGCGCGGCGCTCTTCCTCTACGATTTCGACGCCAG
GTACCTCTACGGGCCCTACCGCGCCGACTCCGACGGCGGGCGCGACCTCGAGCCCGCCGC
CTTCCAAGGCCGCCTACCTGCCCAGGTCAAATTTATGATTGATGGCGATTTCATGCCTGT
CCGAGGGAAAACTATGAGATACACCATAAAAGAGAATTATCCCGGCAAGTTCTTGCCAGA
ACTTACCTTTACACAAGTTGAGAAACTGAGAGCATTGTTCCGTCCAATTACTTCACTGCC
AGTGCCAGAGGCACCACCTCTGTATTATGTTGACAACAGTCATGCCGCTCCATCTACTGC
TTTTCTGCATCCTTCAGCTTCATCTTCATACCCAACACAGCCAGCTTCTTATGTGCATCA
CACAAGCGCCTATGTTCTCACTCCAGCTGCTCATCTAGTGCCAAATGAAGTGCCTGGGAG
AGTTGTGCCACCACATGAACTGTCCGTGACGAACCCGCAACTTGTCATGCACTATGGGTA
CGCCGCAGGCAGCGAGGGTGCAACCGGAGAAACTACACAAGTCCAGTACTGACGGAGCGA
TCTACTCCCATGCGGGTGCCTCAGCGATCACTTTATCAAAATCAGTTTCACTTCATCAAA
TTCACTTTGGAGCAGTTTCATACAGAAGCTATAACACTATCTTTTTTAAAAAATTCAATG
CATTGCATTAAACAGTGTGCGAAGCGCATTCGCTCGTCACCAAAGCAGATACACACGGAT
CCGTCAGATACAGAGTCAGTCATACCAGCCCTGAGTGTTCCCTTCGCAGCCAAAGCATGC
GCTATTTGATTACACATTCTGGGGCAGTGCTCAATCTTATACCCCATGAACTGACTACGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_6731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g32270.3	453	6e-62	protein\|N-rich protein, putative, expressed
Brachypodium v1_2	Bradi4g17340.1	422	2e-71
Arabidopsis v10	None