barSeed - Barley Seed Development Database

Probe CUST_41951_PI390587928

Source Contig U35_6740

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41951_PI390587928	Hv_44K_v2	GAGTAACATTGTAGCATTTGTGAGTGCAATGACAGATTGCACAGTTGCGTTTTTATTTTA	1215	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.280	1.379	0.988	1.108	0.459	0.293
Raw	32.572	58.829	35.169	58.550	8.900	5.576

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78794.2	1711	2e-24	570 - 629	100	60 / 60	minus	ABC16550
Harvest21	ABC16550	1281	3e-25	1216 - 1275	100	60 / 60	plus	ABC16550
Harvest35	U35_6740	1281	3e-25	1216 - 1275	100	60 / 60	plus

Contig Sequence (1281 bp)

>U35_6740 1281 Hv_44K_v2
CGACATGNGACGCGCACTACATGCGGCGGTGCGTCGAGCTGGCGCGGACGGCGGCCGGGC
ACACCAGCCCCAACCCCATGGTGGGCTGCGTCATCGTCCGCGAAGGCAAAGTCGTCGGCG
AGGGGTTCCACCCCAAAGCCGGCCAGCCCCACGCCGAGGTATTTGCTTTGAGAGATGCAG
GGGATTTAGCAGAGAATGCAACGGCTTATGTGAGTTTGGAGCCCTGCAACCACTACGGGA
GGACCCCTCCCTGCTCTGAAGCACTAATCAAAGCCAAAGTTAAGGAGGTTGTGGTGGGGA
TGACTGATCCAAATCCTATTGTAGCATCCAAAGGGATTGAAAAACTCAGAAATGCCGGGA
TAGATGTGAGGGTTGGTGTGGAGGAAGCATTATGCCTCAGATTGAATGAGGCTTACATTC
ATCGCATGCTTACTGGGAAGGCCTTTGCAACTTTGAGAGCTACACTCTCGATGAATGGAA
TTGTCATAAACCAAATTGGGAGCGGAACTGATCAACCAGGAGGATACTACTCACAGTTAG
CGAAAGAATACGACGGGGTTATAATTTCAAGCGACATGGCCAAGGCGACTGCCTTACCAA
TGTCACGCGAGGCTGGCGCCAAGCAGCCTCTTTACATCATCATAGCGCAGGGACAAGGTT
CCAAATTGGACATCCCATTTCTTGACGAAGAGTCTGCATCTAACGCCATAGTCCTTGCCG
ATAGTCCCGTCACCGTGGAGCCAGCGGGAGTCAGCGTCTCAGTCCTCGATCAGATGAACC
TAGAGTCCATCCTTCAACTTCTCGCTGATCGAGGGTTATGCAGCGTGCTGGTGGATTTCA
GAGATGCCGGAGGCGTCCTGGCGTCGCTGCTGAGCAAGTTTCAGGAGGACAAGCTGGTGC
AGAAGGTTGTCTTGGAGCTCTCTCCTGTCTGGATGGTGAGCCCTGGGCCGAGTGACCTGG
CGTTTGGTGGCAGCCAGTCGTTTGCACTCAAGAACGTGGAGCACAAGGAGGTGAATGGAA
CTTTGCTGCTTGAGGGATACTTGTAGCATCTTATCTTTTCTGTCTGATGATTTGTGACCT
CCTGTTGTAAACACCCAGCCATGTAAACTTGAGCCTGAACCTGCATTCATGCCGAGCTGA
ATCCATGGACAAATATTTGTTGTAAGGTAAATCCAGCCTTTTTTTGTTCTCGTTCCTGCT
TGTGGAAATTATTGCGAGTAACATTGTAGCATTTGTGAGTGCAATGACAGATTGCACAGT
TGCGTTTTTATTTTATTTTTT

Homology of Contig U35_6740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02600.1	424	0.0	protein\|riboflavin biosynthesis protein ribD, putative, expressed
Brachypodium v1_2	Bradi1g77370.1	402	0.0
Arabidopsis v10	AT4G20960.1	426	2e-118	Cytidine/deoxycytidylate deaminase family protein \| chr4:11212077-11213530 FORWARD LENGTH=426