barSeed - Barley Seed Development Database

Probe CUST_41950_PI390587928

Source Contig U35_6741

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41950_PI390587928	Hv_44K_v2	TGGTGCCATCTTATGCTGCCATGTCACATATTGTTGCGATATGAATATCTACAGTTTTTT	1278	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.293	1.390	1.131	0.930	0.428	0.465
Raw	1975.750	3372.099	2373.983	3082.330	493.259	586.486

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367129	3510	2e-24	3397 - 3456	100	60 / 60	plus	ABC15216
JLOC1	JLOC1_32984.1	1100	8e-25	972 - 1031	100	60 / 60	plus
Harvest21	ABC15216	1403	3e-25	1279 - 1338	100	60 / 60	plus	ABC15216
Harvest35	U35_6741	1404	3e-25	1279 - 1338	100	60 / 60	plus

Contig Sequence (1404 bp)

>U35_6741 1404 Hv_44K_v2
TCAAAGTGGGAGAAGGAACTGCCAAAAATAGTGTTCGATTCACGATTTAAGGCTATTCCA
AGTCACTCGACTAGACGGGCTATATTTGACCACTTTGTTCGGACACGTGCTGACGAGGAA
CGAAAAGAGAAGAGAGCTGCACAGAAGGCTGCTGTTGAGGCATATAAACAGCTATTAGAA
GAAGCATCTGAGGGCATCGATTCTAAAACAGGCTACCAGGAATTCGAAAGAAAATGGGGT
GCTGATCCAAGATTTGCAGCCCTGGATAAAAAAGAAAGGGAGGCTCTTTTCAAGGAGAAG
GTGAGGGCTCTTGAAGAGAAAGTTCAATCAGCGCGAAATGCTGTCATAACTGACTTTAAA
TCAATGCTTCGAGAATGTAAAGATATAATCTCAACCAGCCGTTGGACCAAAGTGAAAGAA
AATTTCCGGAGTGATCCAAGGTACAAAGCTGTAAAGCACGAAGAGAGAGAAAATGCTTTT
AATGAATACATAGCAGAACTTAAATCCGCTGAATGGGAAGTGGAGCAAGCTGCAAAGGCT
AAAGTGGATGAACAAGCCAAATTAAGGGAGAGGGAACGCGAAACTCGCAAAAGGAAAGAA
AGGGAAGAGCAGGAAATGGAGAGAGTAAAATTGAAGATCCGCAGAAAAGATGCCACGTCT
TCGTATCAGGCTTTGCTTGTTGAAACTATAAAAGATCCAAAGGCATCATGGACTGAATCC
AAACCAAAACTTGAGAAGGATCCGCAAGGTCGTGCTGTAAATCCGGACTTAGGCCAAGGT
GAGGCCGAGAAGTTATTCCGTGAGCATGTCAAGGACTTATATGAGCGCTGTGTCCGTGAC
TTCAGGGCACTTGTGTCTGAGGCCATTGCCCCAGAGGCAGCAACTCGGACGACAGATGGA
GGAAAGACTGCGGCTATCTCTTGGAGCGAAGCAAAAGACCTGTTAAGATCTGATCCAAGG
TACATAAAAGTGGCAAGCAAAGACCGAGAGGCAATTTGGCGGCGATATGCGGATGATATG
GTGAGAAAGCTCAAACAGTCAGACACTGAGAAACCGGATACCGATGCCAAACAACAACAA
CACCGCAGGTCCTCTGATCCGCCCAGGCGGAGGTAACTTTAGAAAATACGTTCACTTGTG
TACCTCCCTGGTTATTCCTCTTGACGGGTTGGTTCAGGACCCCTTGTCTGTGTAACAAAA
TGGCCTTGAGTTATCATCACCAGTTTTGATAGCAAGAGCTCGACTGTTGTTTAAGCTTTT
GGGCATGCAACCCCTTCCTGGTGCCATCTTATGCTGCCATGTCACATATTGTTGCGATAT
GAATATCTACAGTTTTTTTGTTGTTGTGAAAGAATAAATTTGTACTGTTGATGAAAATCA
TGAAATGCCTTGAGTTGTCTTCCC

Homology of Contig U35_6741 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34380.1	1079	2e-162	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g29247.1	1042	8e-178
Arabidopsis v10	AT3G19840.1	835	5e-107	\| Symbols: ATPRP40C, PRP40C \| pre-mRNA-processing protein 40C \| chr3:6891228-6897227 FORWARD LENGTH=835