barSeed - Barley Seed Development Database

Probe CUST_41947_PI390587928

Source Contig U35_6744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41947_PI390587928	Hv_44K_v2	GGCACTGGATCATCTTGAATCTGTTTGATTAAATACTAGATCAGCACTGTTTTTAATCCA	1047	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12156.2	2769	2e-24	2642 - 2701	100	60 / 60	plus	ABC18011
MLOC	MLOC_12156.3	2639	2e-24	2512 - 2571	100	60 / 60	plus	ABC18011
MLOC	MLOC_12156.1	2710	7e-23	2654 - 2710	100	57 / 57	plus	ABC18011
JLOC1	JLOC1_8141.1	2686	8e-25	2557 - 2616	100	60 / 60	plus
Harvest21	ABC18011	1144	3e-25	1048 - 1107	100	60 / 60	plus	ABC18011
Harvest35	U35_6744	1144	3e-25	1048 - 1107	100	60 / 60	plus

Contig Sequence (1144 bp)

>U35_6744 1144 Hv_44K_v2
GGCATTTTGGTTAACAAGATTCCGGGAATGGTAGATGTTTTGACCCAAAAATATTGCTTG
GGAGAATGAAAGAGGGAAAGAGTTCACATATGATGGTGTACGCCTTCTCTCAACGCTGGA
CGAATACATGATAGTACGCCAGGAGAAAGAACAAGAGAAGAAGAGACAAAGGGATCAGAA
GAAGCTCCACGATCAACTCAAAGCTGAGCAGGAAGCTCTCTATGGTTCGAAACCAAGCCC
ATCCAAGCCTCAGAGTATAAAGAAGGCGCCTAGACACTCGATGGGTGGTGTAAACCGCAG
GGTGTCTATTGGTGGAGCCACGATGCAAGCACCGAAAACAGACATATTGCACTCCAAGAA
TGTTCGTGCTGCCAAGAGAACTGAAGACATTGCCCATTTGTCCCCTGCCAGTAGAGGCCT
AGACATTGGCGATCTTCCCATCAAGAAGCTATCTTTCAATGCCACTGCTCTACGTGAAAC
AGAGACACCTCGCAAGCCTTTTGCCCAGATCATGCCGCCGGCAAGCAGTGTCCCCTCCAC
TCCTGCACGCTCCGTGACCAATGACACGGAGGACGAAAACCGAACCCCCAACCCCAAGAC
ATATGGAGCAGCACTGAATCTCAAGACGCCGACCGTGGCGGCTCCGATGCAGTTGGCGAT
GACGCCCACCGTGGCTAACAAGGTCACAGCCGCCCCTGTTTCCCTTGTCTACGAGAAACC
GGAGCCAGCATTGCCGGAGGCGGTCGAGTATTCCTTCGAAGAAAAGCGGCTGGCCGTCTA
TTTGTCCAGAGAAGTTGTTTAGCTGTCAAGACATGTCAAGATCTCCACTCTGTGGGTAGG
TGAAAGTTGAAAACCTGACTGCAGTTACTTGTGAGAGACTAGCTGTTTGCCTATGTTGGT
CGACGACAGTCGCCCAGCGCTGTTATGATTGTTTCTCTGCCATATTTGATTGTTTCCATA
CTCAGCAAAGGAAGCTCGCACTTCAGCAGCTTCCGTTCAGTACTGCCATTTGGTTAGCTA
ATTAAGATATGTATAGGTTTCTTTCTCGGCACTGGATCATCTTGAATCTGTTTGATTAAA
TACTAGATCAGCACTGTTTTTAATCCACATGATTATGGGTGAACCGTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_6744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49200.1	690	9e-93	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi2g46800.1	689	3e-109
Arabidopsis v10	None