barSeed - Barley Seed Development Database

Probe CUST_41941_PI390587928

Source Contig U35_6750

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41941_PI390587928	Hv_44K_v2	GCAGGCAGACAGGCTTAGCTGGGTGACAAGCTCCGTTAATGATTGATTTGCATTCATAAA	671	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.653	1.964	1.225	0.615	0.210	0.182
Raw	3135.690	3422.313	1953.857	1539.208	190.839	174.222

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6436.1	1899	3e-24	1630 - 1688	100	59 / 59	plus
Harvest21	ABC16238	745	3e-25	15 - 74	100	60 / 60	minus	ABC16238
Harvest35	U35_6750	745	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_6750 745 Hv_44K_v2
GGTATGAGCACCTCAATGAGGCACTGCACGTGCTTGTGGAAGCAGAGTTCCCAGCAGACA
TTATTGATGTGCGTCTAAACCAGGCTGTGACCATCCTGGAAGATCTTCTCAAACCAATTG
ATGAGTCCATGGACTACTACAAGAAGCAGCAGCTGAGAGAGCTGGCCATCCTGAACGGCA
CTCTGAGGGAGGAAAGCCCCAGCCCGCACCTTAGCCCGAGCGTGTCCCCCTTTAACTCCG
CCGGGATGAAGCGTGCGAAAACGGGGCGGTGATCTGAAAGAAAATAAACCTCGTCTGTCT
GAATCTGATGACAAGGGTGGAGATGATTGGTGTTGCATATGCCGGGATGATGAGTGCTGG
CCTATGCCTGTCATGATCTGCGCGCTTTACCAACCGTATGATGGGTCCCGTGGGCGGGCG
AATGATGATCCTCGGTGGGCTTGATTGATGTTTGACGCTGTCCCTATTATTTATTCTTTC
TGTGCAATCTGACTTTGAAAAAATTGACATTGTTTATTGGTTTGGGATAAGTTAACAAGG
CCAGGTGGCCATCCAAGTGTCGGACAATAATCAGCCAGGTATTGCGTGCCTGGAAGAAAT
AGCTGTAATATGATATTGTCAAGTGCTGGTGCTTTTGTGTGCTAGTAGTGGTGGTAGTAC
TAGACAGGCAGGCAGGCAGACAGGCTTAGCTGGGTGACAAGCTCCGTTAATGATTGATTT
GCATTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None