barSeed - Barley Seed Development Database

Probe CUST_41940_PI390587928

Source Contig U35_6751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41940_PI390587928	Hv_44K_v2	GGCATCAGAGACCCAATTTGGTTGAATGAATATGCAGAGTATTGCTGTCAGCGGTTACAT	778	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_742.2	2228	2e-24	980 - 1039	100	60 / 60	minus	ABC15420 ABC38835
MLOC	MLOC_743.1	1257	3e-21	1 - 54	100	54 / 54	minus	ABC15420
JLOC1	JLOC1_447.2	2310	8e-25	1063 - 1122	100	60 / 60	minus
JLOC1	JLOC1_447.1	2307	8e-25	1060 - 1119	100	60 / 60	minus
Harvest21	ABC15420	872	3e-25	779 - 838	100	60 / 60	plus	ABC15420
Harvest35	U35_6751	872	3e-25	779 - 838	100	60 / 60	plus

Contig Sequence (872 bp)

>U35_6751 872 Hv_44K_v2
CCGCGTCGTGCTCCACCTCCACCCTCACTACCGCCACCTCATCGTACTCCACCCCCACCA
TCACCACCCATTCGCCCACCGCCACGCCCACTAGCCCCACCTCCGCCACATATCAACCCA
CCAACACCTCCTCCTAGCCCTCCACACCACATGGTCATCATCGTGGTGTTTGTCTCCTTA
AGCGGGCTCCTCCTGCTTGCATGCCTAGCTGCCTTCTGCTTGCACAAGAAAAAGAAGAGG
AAGACAGAAAGGAAGGCCGAGGTATTGAACTTCAGCGACCATGTCCATGTCCACAAGTCA
GCCATGTCAAGCCCTGGGGGCTCCAAGGCCGTCAGGCTGACAGTTGACGAGGACGTCAAG
TTCCAAGAGGTGGTGAAGGAATCAGAGGCCGTCGGCAAAGAGTCAGGCACCGCCCACAAC
GCCTGGATGTGGAACAAGAAACAGAAGAGCAAAGCAAAGCAAGATTCAGAGGTCATCAAC
GTCACCGGACACATCCATGTCGATGAGAAGATTGAGTCAGGGCCCCACGGCGAGAAAATC
GAGGTCCTTTCAGAAGATGAAGATATCAGGTTTGAAGAGGCAGACAACAAAGAAGAATCA
TCTGCAAAATCAAAGGCACGCATTACCAAGTTCTAAGACAACAGCACAATGCGCCAAGAT
GGCCTGCACCGAAAACACTTCAGCAGGTCAAGGCAATGATCCAATCCATACCCACACTGA
TTTCATGCATTTATTATTTTGATAAAGACTGTATCTTCTTTCGTGTGATTGAAATAAGGG
CATCAGAGACCCAATTTGGTTGAATGAATATGCAGAGTATTGCTGTCAGCGGTTACATAA
AAAAAAAAAAAAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g13290.1	168	9e-57
Arabidopsis v10	None