barSeed - Barley Seed Development Database

Probe CUST_41936_PI390587928

Source Contig U35_30181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41936_PI390587928	Hv_44K_v2	TTTCTGGATCTCACCGTTTCTTTGTATCTCTCTGATTCAGGTCCTTGAGATCTCCGGCAA	336	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65728.1	1346	2e-24	912 - 971	100	60 / 60	minus	ABC00119
Harvest21	ABC29952	479	3e-25	337 - 396	100	60 / 60	plus
Harvest35	U35_30181	479	3e-25	337 - 396	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_30181 479 Hv_44K_v2
CTCAGATGGCCTCTCAGATCCCGGCCGTCTCTCCGGCGACCACATCACCAGCCCGCTCCC
TCTCACTCTCCACCGCGAATCCGGAGATGGACATTTCCGGCAACAGCGGGAGGGGCAAGG
AGAAGCCCGCGGTCAGAGCGAAGCCCGTGACCAAGTCGTCTAAGTCCGGCCTGGTGTTCC
CCGTCGGCCGCATCGCCAGGTACCTCAAGGCCGGCAAGTACGCGGAGCGCATCGGCGCCG
GCGCCCCCGTCTACCTCGCCGCCGTCATAGAGTACCTCGCCGCCGAGGTACGCATCCTAC
CCTCCGCTCATTCCCCGCCCCCGCGCTCTTGCTCTGTTTCTGGATCTCACCGTTTCTTTG
TATCTCTCTGATTCAGGTCCTTGAGATCTCCGGCAACACGGCGTTGGACAACAAGAGGAC
CCGGATCACGCCGCGCCACATCCAGCTGGCGATGCGCAACGACCACGAGATTGGCAAGC

Homology of Contig U35_30181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None