- Probe CUST_41935_PI390587928
- Source Contig U35_30182
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_41935_PI390587928 | Hv_44K_v2 | ATACGAGTTTTGCTGTGCTGGAATTCTGTAGCAGTTTATTATGAATATATTGTTCGAGCT | 467 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 2.112 | 1.728 | 1.115 | 0.741 | 0.278 | 0.394 |
Raw | 5766.650 | 7353.340 | 4195.290 | 4428.673 | 580.340 | 896.282 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK248684.1 | 2397 | 2e-24 | 2337 - 2396 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_71885.1 | 1679 | 2e-24 | 1556 - 1615 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_47796.1 | 1698 | 8e-25 | 1560 - 1619 | 100 | 60 / 60 | plus | |
Harvest21 | ABC29953 | 527 | 3e-25 | 468 - 527 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30182 | 527 | 3e-25 | 468 - 527 | 100 | 60 / 60 | plus |
Contig Sequence (527 bp)
>U35_30182 527 Hv_44K_v2 TTGAGTCCCTCCGCCGTCCTCTTAAACGAACGATAGACCAGGTGAGTGAGAACAGGGATT TCGTGCAAAGGAAGAGGGAGGTGGTCTCTTTCTCGCCAAATGATGCGTTGTCAGTCGAGA GCTTCCTCCAGGATGAGGAGATGAGTGGAAACGCCTCCTTCACCCAGTTCTACGCATCAG TGGCAAAGAGTCGCCAATCGAGAGGGAGAAAATTGGTGTAAAAGGCGGGTCTAGAATGCC ATAGTTGATTGGCTGCCAGAACAGGGCTCAAGGACCAGGCGGACGATGAACGATTAGGAT GTACACACTGGTAGTGATGATCACTATCTGTTGGCGAAGGTCGGAGTTTACGGGCCGGCT TGCTGCTTGTCGGTGTGGTGCTTGAACTATCGAAATTGTCGCCGAGCAGATTTGGAGTGT GAATGTGGCACCCTTTTTTTTTAAATCTTGTAGCANCCTTTTTGGGCATACGAGTTTTGC TGTGCTGGAATTCTGTAGCAGTTTATTATGAATATATTGTTCGAGCT
Homology of Contig U35_30182 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |