barSeed - Barley Seed Development Database

Probe CUST_41933_PI390587928

Source Contig U35_30184

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41933_PI390587928	Hv_44K_v2	GTCTCGCCCTCTGCTGTCGACGCGGTTTCCTCCCGTTGACTGATTTCCTTTACTAAAAAA	459	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.967	2.325	1.307	0.587	0.376	0.214
Raw	521.939	853.046	473.854	325.460	72.927	46.529

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC29955	521	3e-25	460 - 519	100	60 / 60	plus	ABC29955
Harvest35	U35_30184	521	3e-25	460 - 519	100	60 / 60	plus

Contig Sequence (521 bp)

>U35_30184 521 Hv_44K_v2
GTTGCTTTCCTAACATGGTATTAGAGCCTAGGTTCTTTTTCGCACGCGCAACTCGTGCTC
TTCCCGATCCAATCTTCTAACACAGCCGCCGACGCAGTTTCTCCTCCCGTCCTGCCTCGG
TCTCGCTGGATCTCGTCTCCAGGATCCTCCCGTCGCGAGGCAGCTCGATCTCGCGCCTTC
CCGCCGATCCAGTCGCCCGCGCCGCCCCGCTGATCCAGTCGCCCCTCCTCGATCCGCAAT
GCGCCGCCAGGACCGATCCAGTCGCCCCTCCTCGATCTGCAACGCGCCGCCAGGACTGAT
CCAGTCGCCCCGCGACCCTGCCGTGTTGTTCCGTTGACCGCGACCCTAGCGTGTTGTCCC
AGGGATTCTGTTGCCTGATTTTGCGATCGGGATTCGCCTCCGCGCCTTGATCTGATCCAG
CCGACACGGTTTCCACTGCCGACGTGGCCTCCAGATCCAGTCTCGCCCTCTGCTGTCGAC
GCGGTTTCCTCCCGTTGACTGATTTCCTTTACTAAAAAAAA

Homology of Contig U35_30184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None