- Probe CUST_41931_PI390587928
- Source Contig U35_30186
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41931_PI390587928 | Hv_44K_v2 | TTGTATGAACCTAGCATTGCAGAAGGAGCAATCAAAGACGGAATATTTGTGGGGGATAAA | 302 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.557 | 1.257 | 1.134 | 0.850 | 0.376 | 0.370 |
| Raw | 2214.330 | 2734.198 | 2209.710 | 2550.885 | 404.868 | 434.105 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65373.3 | 1683 | 2e-23 | 1611 - 1668 | 100 | 58 / 58 | plus | ABC17931 ABC26285 ABC26859 |
| JLOC1 | JLOC1_43015.2 | 1998 | 1e-23 | 1897 - 1954 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_43015.1 | 1845 | 1e-23 | 1744 - 1801 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC17931 | 1168 | 3e-25 | 1100 - 1159 | 100 | 60 / 60 | plus | ABC17931 |
| Harvest35 | U35_30186 | 371 | 3e-25 | 303 - 362 | 100 | 60 / 60 | plus |
Contig Sequence (371 bp)
>U35_30186 371 Hv_44K_v2 CGCACCTCCACACTCACACTTGTTAAGAAGGCCAGGTAAACTAAAAGGCCATTATGTTGT TCGGTCCTCTAAAGGTAACACAAGCAAAAGCTCGGGTATTCCCTGGAACCGCAAATCGTT CGTCTTTGAGCGTCACGGTTTTGGTCTGCAAACTCAGCATCTTGTTTCTGCGGTTCTTGC CCTCCTCCCGACTTGTGTTTTGATTGATGTATGTATGAAGAATTGTTTTGTAGTAGAAAA AGAGACATTTATCTTTTTTCCATGCCTGTTGAAACGGTCAGCTCATGAGTTTCGGTATAA GCTTGTATGAACCTAGCATTGCAGAAGGAGCAATCAAAGACGGAATATTTGTGGGGGATA AAAAAAAAAAA
Homology of Contig U35_30186 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |