barSeed - Barley Seed Development Database

Probe CUST_41907_PI390587928

Source Contig U35_42174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41907_PI390587928	Hv_44K_v2	ACTGTAGGCGCTTCTGCCCATGACAGGGAATACTACAATTATGTTGTACTTGGCAACAAT	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368100	2958	2e-24	1350 - 1409	100	60 / 60	plus	ABC20303
MLOC	MLOC_74653.2	2111	2e-24	1132 - 1191	100	60 / 60	minus	ABC20303
MLOC	MLOC_74653.1	2582	2e-24	1603 - 1662	100	60 / 60	minus	ABC20303
JLOC1	JLOC1_49770.1	2582	8e-25	921 - 980	100	60 / 60	plus
Harvest21	ABC37656	647	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_42174	647	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_42174 647 Hv_44K_v2
GGCCCAATACTCCTAGCTTTTCAGATGACTTGACAGCTGACAATTATCCAGTTCCTGCTC
ACTACTCTGGTAATTGTGAGGTTACAAGTGATTTTCCATCTGGGTCCTGCAACAGAAAGC
TTGTTGGAGCTCGTCATTTTGCAGCATCTGCATTAACCCGAGGAGTCTTCAATGCCTCAC
AAGATCTTGCTTCACCATCTGATAGTGATGGCCATGGGACCCACACAGCTTCCATCGCGG
CTGGTAATCATGGCATACCTGTTATTGTTGCTGGGCATCACTTTGGGAATGCAAGTGGAA
TGGCTCCTCGTGCACACATCGCTGTCTATAAAGCGCTGTACAAAGGTTTTGGAGGTTTTG
CTGCTGATGTAGTGGCTGCAATAGATCAGGCAGCTGAAGATAATGTTGACATAATCAGTT
TATCCATTACCCCTAATAGGAGGCCTCCTGGATTGGCTACATTCTTTAATCCAATTGATA
TGGCACTAATGTCAGCTGTGAAAGATGGCATATTTGTTGTGCAAGCTGCAGGAAATACCG
GTCCTTCCCCTAAGAGCATGTCTTCATACAGTCCATGGATTTTTACTGTAGGCGCTTCTG
CCCATGACAGGGAATACTACAATTATGTTGTACTTGGCAACAATTTG

Homology of Contig U35_42174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56320.1	850	2e-123	protein\|OsSub4 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi2g51130.1	857	6e-125
Arabidopsis v10	AT1G30600.1	832	7e-103	Subtilase family protein \| chr1:10841341-10844906 REVERSE LENGTH=832