barSeed - Barley Seed Development Database

Probe CUST_41902_PI390587928

Source Contig U35_42182

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41902_PI390587928	Hv_44K_v2	CAGAGGGAGGGACGTCATATCAGAACCTGCTCAAGCTTGTGAAACTGCTAACAGAATAAT	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57500.1	1520	3e-21	1392 - 1451	97	58 / 60	plus	ABC13982 ABC19199
MLOC	MLOC_57500.2	1710	3e-21	1443 - 1502	97	58 / 60	plus	ABC13982 ABC19199
Harvest35	U35_42182	628	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_42182 628 Hv_44K_v2
GAGAAAGTACTGTATCCTACAGTACTATATCTTGCAAGCTGGTGCTACTACCCAGTAGGT
CGCATCCATGGCTGCTCCTCACCCTCACGTGATGGTGCTTCCGTTCCCAGCGCAGGGCCA
TGTCATGCCCCTCATGGAGCTCTCCCACCGGCTCGTCGGCCCTTTCTTTGGGCGGTCCGG
CCGAACATCACCACCGGAATAGGAGAAGATTGGCTCGACGCCTTCAAGCGCCGCGTGGAG
GGCAAAGGTCTAGTCGTGGGCTGGGCGCCACAGCAGCGTGTGCTCTCGCACCCCTCCATC
GCCTGCTTCGTGTCGCACTGCGGGTGGAACTCCACCATGGAAGGGCTGCGGCACGGCGTG
CCGTTCCTGTGCTGGCCATACTTCGCCGACCAGTTCTGCAACCAGAGCTACATCTGCAAC
GTGTGGGGCACCGGCGTCAAGATCCACGCCGACGAGAGAGGGGTCGTGACCAAGGAGGAG
ATCAAGAACAAAGTANAGCAGCTGCTGGGTGACGCTAGGATAAAGGCAAGGGCGGCTACG
TGGAAGGATGCGGCGTGTACGAGCATCGCAGAGGGAGGGACGTCATATCAGAACCTGCTC
AAGCTTGTGAAACTGCTAACAGAATAAT

Homology of Contig U35_42182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55040.1	458	1e-90	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g08145.1	463	3e-90
Arabidopsis v10	None