barSeed - Barley Seed Development Database

Probe CUST_418_PI415269222

Source Contig TA40739_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_418_PI415269222	Hv_44K_v2	GAAATTTAGTCTACTACTCTGCCATCGCGGTACATGATACGCAAGCTTTTGCAATTCTAG	1567	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.267	1.451	1.027	0.868	0.445	0.456
Raw	117.146	191.469	130.446	169.291	30.828	33.959

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6812.1	1647	4e-23	1562 - 1622	98	60 / 61	plus
Harvest21	ABC10066	1083	3e-25	1009 - 1068	100	60 / 60	plus	ABC10066
Harvest35	U35_4670	1083	3e-25	1009 - 1068	100	60 / 60	plus

Contig Sequence (1627 bp)

>TA40739_4513 1627 Hv_44K_v2
CTGGCAGATACACGCCAGCGAGGAGGAATTTCCCCGCCGATGGCGGTCAACGGGGCGGCC
AACGGGTCGTCGGGGGCCAACGGGTCCTCGGGCCCGACCAGGACCGTGCTGGTTACCGGA
GGGGCCGGCTACATCGGCAGCCACGCCGTGCTGCAGCTGCTCGCCGCGGGCTTCCGCGCC
GTCGTCGTCGACAGCCTCGAGAACTCCTCCGAGCTCGCCGTCCGCCGCGTCGCCGCGCTC
GCCGGGGAACACGCGCGGAACCTCTCCTTCCACAAGGTTGATATCCGTGACGAGGATGCA
CTGGACGCTGTTTTTGCTTCCACAAGATTTGATGCTGTTATTCACTTTGCTGGACTGAAA
GCTGTCGGTGAAAGTGTACAGAAGCCATTGTTTTACTATGACCATAACATTGCTGGCACA
ATAAATCTTTTGAAAGTTATGGCGGCCCATGAATGCAAGAAGTTGGTGTTCTCATCATCA
GCTGCAGCTTATGGATCACCTAAGAACTCACCCTGCACAGAGGAGTTTCCTCTCCTTCCG
CACAATCCATATGGCAGAACCAAGCTTATGGCTGAGGAGATATGCCGTGATATATACCGG
TCAGATTCTGAGTGGAGGATCATTTTACTTAGGTATTTCAACCCGGTTGGGGCTCACCCC
AGTGGATACCTTGGTGAAGACCCACGTGGAGTTCCAAACAACCTTATGCCCTTCGTTCAG
CAAGTTGCTGTTGGGAGGAGGCCGTCAGTGACAATCTTTGGAAATAACTATGCAACTAAA
GATGGGACTGGGGTACGAGATTATATTCATGTGCTTGATCTTGCTGAGGGGCATATTGCT
GCACTACGGAAGCTTTTTGATAGTTCGTCTAACATAGGATGTGAACCATACAACCTTGGA
ACTGGAAAAGGGACGTCAGTGTTGGAGATAGTAAATGCATTCGAGAAGGCTTCTGGAAAG
AAAATCCCGCTGGTCGTCGGTCAGCGCCGCCCTGGTGACGCGGAGATTCTCTTTGCAGGA
ACTGGTAAAGCAGAGAGAGAACTCAACTGGAAAGCAAAGTATGGCATCACGGAGATGTGC
AGGGACCAGTGGAACTGGGCTAGCAAGAACCCTTACGGGTACGGGTCACCCGACTCGACC
AAGCAGAACGGCAATTCACACTGAACTGAACAACGCGGATCGGTCCGTGTGGACTCACCT
GTACATGCAACTTAGTGCCTACGAGCTGGGATCGGTGTAGATCTAGTCGGCCAGTCATCA
TACAGAGAAAGTTACGAGATTAGAGAAAGGTTGCTCTGTTGCTCTTCCGGTATTGGTACA
AAATCTATCTTCCTCCTGCATATATTTTTTTCGTCGAGATTGTTCTAGGAAGATTTGCTA
GCTTGCTATAGTCAACCAGCTAATTCAATTCTTTTACTGCTAATTGAGTTGCATTGCCTA
GCAGCTGTATACGAATCCTTTTTTGTGCCTGTGCTGTAATAGTAATTAGACGAGCCACAG
TAATACACTCAGCTTGGTTGTATCTTTCTTTCATGCAGCGTGTTGCCCCTCCTGTGTATA
TATATCAGAAATTTAGTCTACTACTCTGCCATCGCGGTACATGATACGCAAGCTTTTGCA
ATTCTAG

Homology of Contig TA40739_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g15420.1	370	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi4g28040.1	380
Arabidopsis v10	AT4G10960.1	351	\| Symbols: UGE5 \| UDP-D-glucose/UDP-D-galactose 4-epimerase 5 \| chr4:6716083-6718472 REVERSE LENGTH=351