barSeed - Barley Seed Development Database

Probe CUST_41896_PI390587928

Source Contig U35_42190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41896_PI390587928	Hv_44K_v2	TTGAATGGGTAAATAGGACTATCCCGCTTGGCGACTATCTCTTAGACAGCAATAGAATTG	443	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.286	1.020	1.489	0.640	0.532	0.438
Raw	40.618	45.747	63.538	42.566	12.119	11.066

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11813.1	2259	2e-24	1288 - 1347	100	60 / 60	minus	ABC20596
MLOC	MLOC_11813.2	2174	2e-24	1188 - 1247	100	60 / 60	minus	ABC20596
JLOC1	JLOC1_7870.1	2316	8e-25	1019 - 1078	100	60 / 60	plus
Harvest21	ABC37687	545	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_42190	545	3e-25	444 - 503	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_42190 545 Hv_44K_v2
TTTCCCCCTTGAGATCTACATTATGTTAGCGGAACTAGAGACTAGGAAGGAGGACACAAA
CAAAAAAATCTCACTACCCAGGGAGTTCCGCAGCATTTGCCAGCTTGTTCTTGCGAAGGT
TCCTGTTGTGACTGCTACTATTCCAGTTGACCCTATTTGTTGATATGAAGAAGGTACCTT
TCCACATTTCAGTGGGCTGGTGGATTCTATTACTATAATGAACGGAATTAATGCTCCAAA
AGTTATTCAGTGTATTGGCTCGGATGGTAACAGATACCGTCAACTTGCAAAGTCTGGAAA
TGATGACCTGCGACAAGATGCTGTAATGGAGCAATTTTTCAGTTTGGTAAATATGTTCTT
GCAAAATCACAGAGATACTTCGGAGAGGAGATTGCGGATACGCACATATAATGTTGTTCC
TTTCACCCCAAGTGCTGGTGTCGTTGAATGGGTAAATAGGACTATCCCGCTTGGCGACTA
TCTCTTAGACAGCAATAGAATTGGCGGAGCGCATGCACGATATGGAACTGGAGACTGGAC
ATTTA

Homology of Contig U35_42190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01689.1	2912	3e-95	protein\|phosphatidylinositol 3- and 4-kinase family protein, expressed
Brachypodium v1_2	Bradi2g00627.1	2845	3e-99
Arabidopsis v10	AT3G48190.1	3845	3e-81	\| Symbols: ATM, ATATM \| ataxia-telangiectasia mutated \| chr3:17797628-17828361 FORWARD LENGTH=3845