- Probe CUST_41890_PI390587928
- Source Contig U35_42196
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41890_PI390587928 | Hv_44K_v2 | ATGTAGACCTGAAAGGGATAGGTTAAATCGTGCTCGCTCGAAGGCAGACACATCAAGTAA | 565 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.494 | 1.217 | 1.143 | 0.759 | 0.570 | 0.429 |
| Raw | 130.439 | 139.994 | 135.512 | 128.531 | 37.790 | 31.045 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12212.1 | 2526 | 2e-24 | 882 - 941 | 100 | 60 / 60 | plus | ABC13512 |
| MLOC | MLOC_12212.6 | 1591 | 2e-24 | 877 - 936 | 100 | 60 / 60 | plus | ABC13512 |
| MLOC | MLOC_12212.4 | 2838 | 2e-24 | 884 - 943 | 100 | 60 / 60 | plus | ABC13512 ABC37697 |
| MLOC | MLOC_12212.5 | 2844 | 2e-24 | 881 - 940 | 100 | 60 / 60 | plus | ABC13512 ABC37697 |
| MLOC | MLOC_12212.2 | 2849 | 2e-24 | 885 - 944 | 100 | 60 / 60 | plus | ABC13512 ABC37697 |
| MLOC | MLOC_12212.3 | 2837 | 2e-24 | 882 - 941 | 100 | 60 / 60 | plus | ABC13512 ABC37697 |
| JLOC1 | JLOC1_8188.4 | 2895 | 8e-25 | 884 - 943 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8188.3 | 2892 | 8e-25 | 881 - 940 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8188.2 | 2883 | 8e-25 | 881 - 940 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8188.1 | 2887 | 8e-25 | 885 - 944 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37696 | 631 | 3e-25 | 566 - 625 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42196 | 631 | 3e-25 | 566 - 625 | 100 | 60 / 60 | plus |
Contig Sequence (631 bp)
>U35_42196 631 Hv_44K_v2 GCCTCACGGAGAGGGGCGTGGGTGGCGTGGCGGTTTCCGGCATGCGTTGATTGGTGATAA GGGAATAGGAGCGGAGCGTTGGTGGCGGCGGTGTGGCATTGCAGCCGCGGATTGGGCTGG TGAGCGCACCGATTGGATCGCTGGAGAAGGACCTCCCCTCTCCGCCGCCATTGGTGGGTA GATGGTGAGTGGTGCCCCCCATGGAGCAGGACATACCCGCCTTCAAGCCGCAATGGCTGA TGCAGGGCCAGGTCACGGCTACTGGTGCCGCGACCCTCTGGGCTGCATCTTCGTCACGCA AAGTAGATTGTCAAGGTAAGGGTGGTTCATCAAGAAATCGCTCATCTGGGCACAGCCGTG ACCAGAGTTCCCGGCAGTCTTCATCACGGAGGAGTTCAGTCTCAAGTGGATCCCGGAGGC TTGACCGGGATGACATGGGGAAGACAAGGGGCTATGCAAATTTTGGAAGGAACAAGGATA AGGAGAGGGAAAAAGATTTTNATTCCCGTGATAGAGAGAGTAGGTCCATTACAGCAGACC GTGATGGCTTTCAATCATTTAGCTCATGTAGACCTGAAAGGGATAGGTTAAATCGTGCTC GCTCGAAGGCAGACACATCAAGTAAGGGAGT
Homology of Contig U35_42196 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |