barSeed - Barley Seed Development Database

Probe CUST_41879_PI390587928

Source Contig U35_1108

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41879_PI390587928	Hv_44K_v2	GAGGGATGTCTCAATAACATGTATGTAACTGAATTACAGGCGTTCACACGATTTAAAAAA	1569	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.535	1.638	1.143	0.910	0.502	0.629
Raw	1636.480	2609.380	1654.573	2025.768	402.749	548.211

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366500	1475	3e-21	1389 - 1442	100	54 / 54	plus	ABC03298 ABC42242
MLOC	MLOC_14019.1	1701	3e-21	1090 - 1143	100	54 / 54	plus	ABC03298 ABC42242
JLOC1	JLOC1_9546.1	1399	2e-21	1163 - 1216	100	54 / 54	plus
Harvest21	ABC03298	1665	6e-22	1562 - 1615	100	54 / 54	plus	ABC03298
Harvest35	U35_1108	1678	3e-25	1570 - 1629	100	60 / 60	plus

Contig Sequence (1678 bp)

>U35_1108 1678 Hv_44K_v2
CTTTCGACAAAACACAAAGGCGATAAACGCAGCCAAGCAAGTCGGCGCGACAATTTCGGC
GGCGTCCTCTCCATCCATCTCCTCCTCACCCTCCCCCGCCGCCTCAACACGGCGCCATCC
TCATCACGAACCCACCAAACAAACAAAAGGCGGACCCAACCCCCTCCTCCCCCGCCTTCC
CCGGAGCACGAACCTCCCCTCCCAATCCCATCCCCGTCGGTAGCCGATCGCGTCGACGAT
GCTGGGCGCCGCGAGGAGATCCGGATGCGTGCTGGGGCAGCTGATGCAGACCCTCCGCCC
GGCGGCCACGGCGGCGAGGAGCTACTCCGCGACCCCGAAGGAGATGACTGTACGTGAAGC
ATTGAATTCCGCCCTTGACGAGGAGATGTCTGCCGACCCTTCTGTTTTCTTAATGGGAGA
AGAGGTTGGAGAGTATCAAGGTGCGTACAAGATAACAAAGGGTTTGCTAGACAAGTATGG
TCCCGATAGGGTTCTCGATACACCAATCACAGAGGCTGGTTTTACTGGCATTGGCGTTGG
TGCTGCCTACCAAGGTCTTAGACCTGTAGTAGAGTTCATGACATTTAACTTCTCGATGCA
GGCAATTGATCACATCATCAATTCAGCTGCCAAATCAAACTACATGTCAGCTGGTCAGAT
ATCGGTTCCTATTGTTTTTCGAGGACCAAATGGGGCAGCTGCTGGAGTTGGTGCTCAACA
CTCGCAGTGCTATGCAGCATGGTATGCCCATGTTCCAGGATTGAAGGTCCTAACTCCTTA
TTCTGCAGAAGATGCTCGAGGCTTGCTAAAAGCAGCAATCAGGGATCCAGACCCTGTTGT
TTTCCTGGAAAATGAACTACTTTATGGTGAATCGTTTCCTATTAAGGCTGAAGTACTTGA
TTCTAGCTTCAGTGTCCCAATTGGCAAAGCTAAGATAGAACGGGAAGGAAAAGATGTTAC
AATTACTGCATTCTCTAAGATGGTTGGGTATGCTCTTCAGGCTGCAGAGATACTGTCCAA
GGAGGGAATCAGTGCTGAGGTGATCAACCTTCGGTCAATTAGACCATTGGATAGAGCTGC
TATCAATGCATCCGTTAGGAAAACCAATAGATTGGTAACCGTTGAAGAAGGCTTTCCACA
ACATGGTGTTGGTGCTGAAATATGCATGTCCGTTGTGGAGGACAGCTTTGAGTATCTTGA
CGCACCAGTTGAGAGGATTGCCGGAGCTGATGTACCTATGCCCTATGCGGCAAACCTTGA
AAGATTGGCAGTTCCCCAGGTTGAGGACATTGTCCGCGCAGCAAAGCGAGCTTGCTACAG
ATCATCATCAATGGCGGCAACCGCCTAAGCACAAATGCATGTTTTGTTTCTCGGCCTTCT
TCTTTGTTCCTTGTCCAGAAAAGATGTACCGAATCGCATAATTGTATCCTCCAACTCGTG
TGAGCTAATTTTGTAGATCTGCATGCTGCATTGTTGATTCCGATCTGTCGGCGGCAGTCG
GATGGCTGCATCCAGTTGATGGTTCATCCCTAGACATTTGAATCATGCAACTTCTGGAGG
TTTACATTTGAGGGATGTCTCAATAACATGTATGTAACTGAATTACAGGCGTTCACACGA
TTTAAAAAAAAAAAAGCTTAGGCCGATCCGTTCGTGCGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g42410.1	375	protein\|transketolase, putative, expressed
Brachypodium v1_2	Bradi3g41480.1	374
Arabidopsis v10	AT5G50850.1	363	\| Symbols: MAB1 \| Transketolase family protein \| chr5:20689671-20692976 FORWARD LENGTH=363