barSeed - Barley Seed Development Database

Probe CUST_41874_PI390587928

Source Contig U35_1113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41874_PI390587928	Hv_44K_v2	GCTGACTCTCCCTTGGGGCTAGATGACAATATGCATGTTTATATTCAAAATAAAAGTTTA	888	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363359	2784	2e-24	2713 - 2772	100	60 / 60	plus	None
MLOC	MLOC_12760.1	4125	2e-24	1426 - 1485	100	60 / 60	plus	ABC04240 ABC04242
JLOC1	JLOC1_8573.2	3554	8e-25	1740 - 1799	100	60 / 60	minus
JLOC1	JLOC1_8573.1	3222	8e-25	1408 - 1467	100	60 / 60	minus
JLOC1	JLOC1_8572.5	4160	8e-25	1669 - 1728	100	60 / 60	plus
JLOC1	JLOC1_8572.3	4198	8e-25	1707 - 1766	100	60 / 60	plus
JLOC1	JLOC1_8572.2	3885	8e-25	1394 - 1453	100	60 / 60	plus
Harvest35	U35_1113	976	3e-25	889 - 948	100	60 / 60	plus

Contig Sequence (976 bp)

>U35_1113 976 Hv_44K_v2
GCGTATGTGGCTACTGGGGAAAGCTTAAGAGTGATTTCTTGAATGGGAATCAAGGAATTG
CGAGGCAGATGCTCATTGATGAGCTGGTATCGTTCAGTGCAGTACGAGAGATAAAAGTTG
TAGTGGTATTTGATGCCGCATTGTCTGGGCAATCGACACACACTGAAACTTATAAAGGAA
TAAATGGTTGATGTGGTATATTCTGCTGACTTATCTGCTGATTGTTGGATTGAGAAGGAG
GTTGAGGCTTTGGTGTCAGATGGATGTCCAAAGGTCTGGGTTGTAACGTCAGATGTACTG
GAGCAACAATTATCGCATGGTGAAGGTGCTCTTATTTGGAGCTCTAAAAGACTGGTCAAA
GAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAAGAAATCAGGTCAACATCG
TTGCAAGGAAAGATTTTTCAGCACAAGCTGAAACCTAAAGTAGTGCAAGGTTTGAAAAAT
CTTCGGAATCGGCTTGAAGAACAAGAGCGGAAAAAAAAGTGACCGCTCAACGTCAACCGA
TCAGCAAATCTCATCGAGCTGCTGTAACATCGGTTGGCCGAAGAAGGGGGAAGAGAAGTG
GTGTATATTTTTGTACAGGGGAGGAGCACATCGACGTTTTGGTCCATAAGTCGGAGGTGC
CAACTGCGCAAACAACATGTTTGCGACCGCGATGATTGTTGATGAAGACAACATGTTGAT
CAAGCATGCTGGCTGGCCTCATGGAAAGGAATATCTGGTCCTTGTAGGGAAGCGGTCTGT
AGGGAGGGAGACCACAAAATGTAGATTCCTTATCTTTTAACTCTTTTTTTTTTATTTGAT
CATAATCCTGCAGAGAAAAAGCCAGGAGCTGTATAGAAATGTAATGTAGCTGACTCTCCC
TTGGGGCTAGATGACAATATGCATGTTTATATTCAAAATAAAAGTTTATATTTCTGATCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_1113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62610.1	289	6e-66	protein\|RNA-binding protein containing a PIN domain, putative, expressed
Brachypodium v1_2	Bradi1g02080.1	294	2e-73
Arabidopsis v10	None