barSeed - Barley Seed Development Database

Probe CUST_41873_PI390587928

Source Contig U35_1114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41873_PI390587928	Hv_44K_v2	AGCCTGCTCCTTTTCCCAGTTAGTGTGGATTAATCTCAAATGCTTCAATTGATACAAATA	1607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12760.1	4125	6e-24	1524 - 1582	100	59 / 59	minus	ABC04240 ABC04242
JLOC1	JLOC1_8573.2	3554	3e-24	1643 - 1701	100	59 / 59	plus
JLOC1	JLOC1_8573.1	3222	3e-24	1311 - 1369	100	59 / 59	plus
JLOC1	JLOC1_8572.5	4160	3e-24	1767 - 1825	100	59 / 59	minus
JLOC1	JLOC1_8572.3	4198	3e-24	1805 - 1863	100	59 / 59	minus
JLOC1	JLOC1_8572.2	3885	3e-24	1492 - 1550	100	59 / 59	minus
Harvest35	U35_1114	1758	3e-25	1608 - 1667	100	60 / 60	plus

Contig Sequence (1758 bp)

>U35_1114 1758 Hv_44K_v2
GGCTCCAGCCAGCGGACCGACCGACCAGCTGATGTGAGGTGGAAGCCCATCCCTGCACCT
CCACGTGCTCCCACTACTCCTCCACTCGTCACGCTCCAGCTGCCGCCTGCCGGCCGGCCC
CCACCTCCGCGACACGCTCCGCACGCGATCTCCACTCGCTCCGTCCAGCCGGATCCCCTT
CCCCTCCTCAGTCCATCGCCATCCCCTCTTGTTTGATTTCATTTGATCCCCGCATCTCCA
CTTTCCATCTCCGCCGGCCGGGATCTGAAGCAAGCAAGCTCCGATCTTGCCAGCCAGCCA
GCCAGCGGCCATGTCTTCCTCGTCGGACAACCCCAACGAGGTCACCGACCGCGGCCTCTT
CTCCAGCAAGAGCAACAAGGACGACGCCGACGCCGGCAAGAAGAAGAAGAAGGAGGAGGA
AAGCAAGGAGGAGGGCGGCGGCGGGTTCATCGACAAGGTCAAGGACTTCATCCACGACAT
CGGGGAGAAGATCGAGGAGGCGGTGGGGTTCGGCAAGCCCAGCGCCGACGTCGCCCGGAT
CCACGTGCCCCACATCGGCCTCCACCGCGCCGACCTCGTCGTCGACGTCCTCATCAAGAA
CCCCAACCCGGTCCCCATCCCGCTCGTCGACATCGACTACCTCATCGACAGCGACGGCCG
GAAGCTCGTCGCCGGCCTCATCCCGGACGCCGGCACCGTCCGCGCCCACGGCGAGGAGAC
GGTCAAGGTGCCCATCACGCTCGACTTCGACGACATCCGCAGCACCTACGCCGACATCAA
GCCCGGGAGCATCATCCCTTACCTGCTCCGGGTCGTCTTCCTCGTCGACGTGCCCGTCTT
CGGCCGCATCAAGATCCCGCTCGACAAGTCCGGCGAGATCCCCATCCCCTACAAGCCCGA
CGTGGACGTGGACAAGATCAAGTTCCACCACTTCTCCTTCGAGGAGACCACCGCCACCAT
CCACCTCAGCCTCGAGAACAAGAACGACTTCGACCTCGGGCTCAACCTGCTCCAGTACGA
GATGTGGCTCGGCGACGACAGCATCGTCGAGGCCGAGCTCACCGACTCCACCAGGATCGA
GAAGCAGGGGATCACCAAGATGCAGATCCCATTCACCTTCAGGCCCAAGGACCTGGGCTC
GGCCGTCTGGGACATGATCAGGGGCAGGGGAACCGGCTACAGCATCAAGGGCAAGATCGA
TGTCGACACACCATTCGGCAACATGAAGCTGCCCATCGACCATGTCGGCGGAACCACTCG
CCTCAAGAAGGATGACGACGATGACGAGGAGTGAAGTGCTGTTACTAAACATACAAGATA
GTTAAACAGGGCGCAAGGGAGGATGCTGCAAGGGGATGCCTACCTATACCCTTAGCACCA
GCTGAACTCTCGCTCTAGCTCATGGTATCTTTGTTGATTGTGTCGTCCGAACATCGTCCG
TGTTTTTATGCTTCGGTGCTCAGTGTTCGTTGTGGGAACCCATCCAATGTGTATTCTTTC
CGTGTTAACTTTGTTAAGTGGAAACAGACCTGAGAATAAATTCCATCGCCCCTTTGTTGT
TCGTGGGGTTTTCTGGTAGCCTTTTTCAGCCAAAAAAAAAAAAAAAAAGCCTGCTCCTTT
TCCCAGTTAGTGTGGATTAATCTCAAATGCTTCAATTGATACAAATATGTATATTTTTGA
TCACGTGAAACTTGATTAGCAAATATAAACTTTTATTTTGAATATAAACATGCATATTGT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_1114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62620.4	317	4e-168	protein\|late embryogenesis abundant protein, putative, expressed
Brachypodium v1_2	Bradi1g02090.2	327	2e-174
Arabidopsis v10	AT2G44060.1	325	5e-136	Late embryogenesis abundant protein, group 2 \| chr2:18226922-18227988 FORWARD LENGTH=325