- Probe CUST_41872_PI390587928
- Source Contig U35_1115
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_41872_PI390587928 | Hv_44K_v2 | TTTTATGCTTCGGTGCTCAGTGTTCGTTGTGGGAACCCATCCAATGTGTATTCTTTCCGT | 521 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK251906.1 | 1512 | 2e-24 | 1379 - 1438 | 100 | 60 / 60 | plus | ABC04240 ABC04242 |
MLOC | MLOC_12760.1 | 4125 | 2e-24 | 1685 - 1744 | 100 | 60 / 60 | minus | ABC04240 ABC04242 |
JLOC1 | JLOC1_8573.2 | 3554 | 8e-25 | 1481 - 1540 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_8573.1 | 3222 | 8e-25 | 1149 - 1208 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_8572.5 | 4160 | 8e-25 | 1928 - 1987 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_8572.3 | 4198 | 8e-25 | 1966 - 2025 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_8572.2 | 3885 | 8e-25 | 1653 - 1712 | 100 | 60 / 60 | minus | |
Harvest21 | ABC52883 | 391 | 3e-25 | 273 - 332 | 100 | 60 / 60 | plus | |
Harvest21 | ABC04242 | 628 | 3e-25 | 464 - 523 | 100 | 60 / 60 | plus | ABC04242 |
Harvest21 | ABC04241 | 581 | 3e-25 | 522 - 581 | 100 | 60 / 60 | plus | |
Harvest21 | ABC04240 | 1595 | 3e-25 | 1444 - 1503 | 100 | 60 / 60 | plus | ABC04240 |
Harvest35 | U35_50631 | 391 | 3e-25 | 273 - 332 | 100 | 60 / 60 | plus | |
Harvest35 | U35_1115 | 581 | 3e-25 | 522 - 581 | 100 | 60 / 60 | plus | |
Harvest35 | U35_1114 | 1758 | 3e-25 | 1444 - 1503 | 100 | 60 / 60 | plus | |
Harvest35 | U35_1112 | 619 | 3e-25 | 468 - 527 | 100 | 60 / 60 | plus |
Contig Sequence (581 bp)
>U35_1115 581 Hv_44K_v2 GCGGCCTCTTCTCCAGCAAGAGCAACAAGGACGACGCCGACGCCGGCAAGAAGAAGAAGA AGGAGGAGGAAAGCAAGGAGGAGGGCGGCGGCGGGTTCATCGACAAGGTCAAGGACTTCA TCCACGACATCGGGGAGAAGATCGAGGAGGCGGTGGGGTTCGGCAAGCCCAGCGCCGACG TCGCCCGGATCCACGTGCCCCACATCGGCCTCCACCGCGCCGACCTCGTCGTCGACGTCC TCATCAAGAACCGGCTACAGCATCAAGGGCAAGATCGATGTCGACACACCATTCGGCAAC ATGAAGCTGCCCATCGACCATGTCGGCGGAACCACTCGCCTCAAGAAGGATGACGACGAT GACGAGGAGTGAAGTGCTGTTACTAAACATACAAGATAGTTAAACAGGGCGCAAGGGAGG ATGCTGCAAGGGGATGCCTACCTATACCCTTAGCACCAGCTGAACTCTCGCTCTAGCTCA TGGTATCTTTGTTGATTGTGTCGTCCGAACATCGTCCGTGTTTTTATGCTTCGGTGCTCA GTGTTCGTTGTGGGAACCCATCCAATGTGTATTCTTTCCGT
Homology of Contig U35_1115 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |