- Probe CUST_41871_PI390587928
- Source Contig U35_1116
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41871_PI390587928 | Hv_44K_v2 | TTCATCGACAAGGTCAAGGACTTCATCCACGACATCGGGGAGAAGATCGAGGAGGCGGTG | 371 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251906.1 | 1512 | 2e-24 | 381 - 440 | 100 | 60 / 60 | plus | ABC04240 ABC04242 |
| MLOC | MLOC_12760.2 | 1243 | 2e-24 | 706 - 765 | 100 | 60 / 60 | minus | ABC04240 ABC04242 |
| MLOC | MLOC_12760.3 | 1510 | 2e-24 | 973 - 1032 | 100 | 60 / 60 | minus | ABC04240 ABC04242 |
| MLOC | MLOC_12760.1 | 4125 | 2e-24 | 3616 - 3675 | 100 | 60 / 60 | minus | ABC04240 ABC04242 |
| JLOC1 | JLOC1_8573.2 | 3554 | 8e-25 | 483 - 542 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8573.1 | 3222 | 8e-25 | 418 - 477 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8572.5 | 4160 | 8e-25 | 3676 - 3735 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_8572.3 | 4198 | 8e-25 | 3714 - 3773 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_8572.2 | 3885 | 8e-25 | 3401 - 3460 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04241 | 581 | 3e-25 | 96 - 155 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04240 | 1595 | 3e-25 | 446 - 505 | 100 | 60 / 60 | plus | ABC04240 |
| Harvest21 | ABC04239 | 702 | 3e-25 | 245 - 304 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31693 | 499 | 3e-25 | 175 - 234 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1116 | 872 | 3e-25 | 372 - 431 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1115 | 581 | 3e-25 | 96 - 155 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1114 | 1758 | 3e-25 | 446 - 505 | 100 | 60 / 60 | plus |
Contig Sequence (872 bp)
>U35_1116 872 Hv_44K_v2 TCGAGCACTGTTGGCCTAGGACGCTCCAGCTGCCGCCTGCCAGCCGGCCCCCACCTCCGC GACACGCTCCGCACGCGATCTCCACTCGCTCCGTCCAGCCGGATCCCCTTCCCATCCTCA GTCCATCGCCATCCCCTCTTGTTTGATTTCATTTGATTCCCGCATCTCCACTTTCCATCT CCGCCGGCCGGGATCTGAAGCAAGCAAGCTCCGATCTTGCCAGCCAGCCAGCGGCCATGT CTTCCTCGTCGGACAACCCCAACGAAGTCACCGACCGCGGCCTCTTCTCCAGCAAGAGCA ACAAGGACGACGCCGACGCCGGCAAGAAGAAGAAGAAGGAGGAGGAGAGCAAGGAGGAGG GCGGCGGCGGGTTCATCGACAAGGTCAAGGACTTCATCCACGACATCGGGGAGAAGATCG AGGAGGCGGTGGGGTTCGGCAAGCCCAGCGCCGACGTCGCCCGGATCCACGTGCCCCACA TCGGCCTCCACCGCGCCGACCTCGTCGTCGACGTCCTCATCAAGAACCCCAACCCGGTCC CCATCCCGCTCGTCGACATCGACTACCTCATCGACAGCGACGGCCGGAAGCTCGTCGCCG GCCTCATCCCGGACGCCGGCACCGTCCGCGCCCACGGCGAGGAGACGGTCAAGGTGCCCA TCACGCTCGACTTCGACGACATCCGCAGCACCTACGCCGACATCAAGCCCGGGAGCATCA TCCCTTACCTGCTCCGGGTCGTCTTCCTCGTCGACGTGCCCGTCTTCGGCCGCATCAAGA TCCCGCTCGACAAGTCCGGCGAGATCCCCATCCCCTACAAGCCCGACGTGGACGTGGACN AGATCAAGTTCCACACTTCTCCTTCGAGGAGA
Homology of Contig U35_1116 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g62620.4 | 317 | 1e-94 | protein|late embryogenesis abundant protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g02090.2 | 327 | 1e-95 | |
| Arabidopsis v10 | AT2G44060.1 | 325 | 8e-82 | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325 |