barSeed - Barley Seed Development Database

Probe CUST_41870_PI390587928

Source Contig U35_1117

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41870_PI390587928	Hv_44K_v2	GTTCCAAGCTTGTAATGTATCCTGCCTGAAGTTACAAAAACGCAATACCCAGTTTTTGGG	882	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.394	1.168	1.323	0.826	0.209	0.201
Raw	950.258	1239.146	1240.302	1236.130	106.674	112.315

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_33418.1	1091	8e-25	903 - 962	100	60 / 60	plus
Harvest21	ABC03041	965	3e-25	882 - 941	100	60 / 60	plus	ABC03041
Harvest35	U35_1117	966	3e-25	883 - 942	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_1117 966 Hv_44K_v2
CAGCCGCCGTCTCGTCTCGCCCCAAGCTCGTCCCTCCCGAGGTTAGTCTTATTCCATGGC
GGCCCTCATCAAGCTCGGAAGCCTTCTTAGGCAGAGTGCTTTCGCGAGCAGCGCATCGAC
AGGCTCGGCTCCTGCCCTGTTCAACGCTGCCCGTTTCATGTGCGCCGGCCAGTCTGGTCC
TAGCTCCAAGCTTTTCGTCGGTGGTCTCGCCTGGGGTACTGATGATCACTCGCTCAAGGA
GGCGTTTCAAAGCTTCGGAGAGGTCACCGAAGCACGTGTCATCACTGACAGAGAGACTGG
AAGGTCTAGAGGGTTTGGTTTTGTGAGCTTTGCGAGTGAAGAGGATGCAGGAAATGCCGC
CAAAGGCATGGACGGTCAGGAGCTTGGGGGAAGGAACGTCCGTGTGAACTTTGCCAATGA
GAGACCTTCTGGTGGCGGTGGCTTCCGTGCTGGTGGTGGCGGTGGCTATGGAGGTGGTGG
CGGCGGCTATGGCGGTGGTGGCGGCTATGGTGGTGGTGGAGGACGTGATTATGGTGGTGG
TGGAGGACGTGATTCCTTCTAAGAACGGCACCGACTATCAGAATTTGAAATAACGAGCTT
TTAGGACAGTGTCTTGATTATGTGGAACCTACGTTATGTCTGTCTTATCATCTGTGATCG
TTGAACTCAATAGGGGCAGAGATCTGGTTCTATGGTATTTTTGTTTTTGGTTTGTTTCTT
GTCTTGGATGATACAACAGTAAAATCGTGCTTGCTGCTTCGAGACTCGGATGATTCTCTA
GGAAGTTCATGCATTTTGCCGTATGTTGCATTGTGTACTTGTAGTAATGGTTGCAGATTA
ACGTGTGATCATAAATTCTTAGTATTAAAAAAAAAAAAACCTGTTCCAAGCTTGTAATGT
ATCCTGCCTGAAGTTACAAAAACGCAATACCCAGTTTTTGGGTTCAAAAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_1117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None