barSeed - Barley Seed Development Database

Probe CUST_41869_PI390587928

Source Contig U35_1118

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41869_PI390587928	Hv_44K_v2	GTACTGGATTGGGCGTTTATACTGTTTCCAGTGTCTGAATATTATTAGAATGTCAATCAG	3256	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.485	1.490	1.082	0.868	0.327	0.353
Raw	4236.927	6725.777	4213.507	5427.620	711.389	835.048

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10405.1	3381	2e-24	3264 - 3323	100	60 / 60	plus	ABC03250 ABC47661
JLOC1	JLOC1_6811.1	3686	8e-25	3466 - 3525	100	60 / 60	plus
Harvest21	ABC03250	3366	3e-25	3269 - 3328	100	60 / 60	plus	ABC03250
Harvest35	U35_1118	3341	3e-25	3257 - 3316	100	60 / 60	plus

Contig Sequence (3341 bp)

>U35_1118 3341 Hv_44K_v2
GGCCACAACCACATCCTACCCCCAATCTCGCTCCCTACCACGCTGGTCCCTGCGAGGCGG
CGCGGCGAGCGCGAGCAGTAGGGTCGGGTCCGGTCAAAGCGAGGCGGCGATGGCGTTGTC
GGCGCCGGGCGGCGGCAGCGGGAAGATCGAGCGGCTGTCGTCGATCGACGCGCAGCTGCG
GCTGCTCGTACCGGCCAAGGTGTCGGAGGACGACAAGCTCATTGAGTACGACGCGCTCCT
CCTCGACCGCTTCCTCGACGTCCTGCAGGGCCTCCACGGCGACGATCTCAGGGAGATGGT
TCAAGAATGCTACGAGGTGGCTGCTGAATATGAAACAAAGCATGACCTGGAAAAGCTTGA
TGAACTCGGAGAGATGATAACAAGCTTGGATCCTGGCGACTCTATTGTGATTGCCAAAGC
TTTTTCACACATGCTTAACTTGGCCAACTTGGCCGAGGAAGTGCAGATCGCATACAGGAG
GAGAGTCAAGCTCAAGAAGGGAGACTTTGCTGATGAAAATTCAGCAATCACAGAATCTGA
CATCGAGGAAACTCTTAAGAGGCTTGTTTTTGACATGAAGAAGTCCCCTGCTGAGGTCTT
TGATGCCCTCAAGAATCAGACTGTTGATCTTGTTTTGACTGCACATCCAACACAATCTGT
AAGGAGGTCATTGCTTCAGAAGCATTCGAGGATCCGGAACTGTTTGGTTCAGTTATACTC
AAAGGATATCACTCCAGATGACAAGCAGGAGCTTGATGAGGCTCTCCAGAGAGAGATCCA
AGCTGCCTTTAGAACTGATGAGATCCGAAGGACTCAGCCCACTCCCCAAGATGAGATGCG
TGCTGGTATGAGCTACTTCCATGAGACAATATGGAAGGGTGTTCCAAAGTTCTTGCGCCG
TGTTGATACGGCATTGAAGAACATTGGGATCAATGAGCGTGTTCCTTATAATGCTCCTCT
TATCCAGTTCTCTTCTTGGATGGGTGGAGATCGTGATGGAAATCCAAGAGTGACACCAGA
GGTTACAAGGGACGTCTGCTTGCTTGCCAGAATGATGGCAGCTAATTTGTATTGTGCACA
GATCGAGGATCTCATGTTTGAGTTGTCTATGTGGCGATGCAACGATGAGCTACGCGCACG
AGCTGATGAGCTGCACCGCTCTTCTAAGAAGGACGCTAAGCATTACATAGAGTTCTGGAA
GAAGGTTCCTCCAAATGAGCCATATCGGGTAATACTGGGTGATGTTAGGGATAATCTTTA
CAACACACGTGAGCGATCACGTGAGTTGTTATCCAGTGGACATTCTGACATACCTGAGGA
AGCTACTCTGACAAATCTTGAGCAGCTGTTGGAGCCCTTGGAGCTCTGTTACAGGTCCTT
GTGTGCTTGTGGTGACCGTGTTATTGCTGATGGAACCCTTCTTGATTTCTTGCGCCAAGT
CTCTACCTTTGGACTTTCCCTCGTGAAGCTTGACATCAGGCAAGAGTCAGACAGGCACAC
TGATGCTCTTGATGCCATCACCTCATACCTGGGAATAGGATCTTATCGTGAGTGGTCTGA
GGAACGCCGTCAAGAATGGCTGTTGTCTGAACTCAATGGGAAGCGTCCATTATTTGGCGC
AGACCTTCCCATGACAGAGGAAGTTGCTGATGTCATGGGTGCGTTCCAGGTTATTGCTGA
GCTGCCCGGTGACAATTTTGGAGCATATGTCATTTCAATGGCAACATCTCCTTCAGATGT
TCTTGCTGTGGAGCTCCTCCAACGTGAGTGCCATATCAAGACACCACTTAGAGTTGTCCC
CCTGTTTGAGAAGTTGGCCGATCTTGAGGCTGCCCCAGCAGCACTGGCCAGACTCTTCTC
AATAGATTGGTACAGAGAGAGGATCAATGGCAAGCAGGAGGTCATGATTGGGTATTCAGA
CTCAGGCAAGGATGCAGGCCGTCTCTCAGCAGCTTGGCAGATGTACAAGGCTCAGGAGGA
CCTTGTCAAGGTCGCTAAACAGTTTGGAGTGAAATTGACGATGTTCCATGGACGAGGTGG
CACTGTTGGAAGGGGGGGTGGCCCTACTCATCTTGCTATCTTGTCTCAGCCACCGGACAC
TATCAATGGATCACTCCGGGTCACTGTTCAGGGTGAAGTTATCGAGCAGAGCTTTGGGGA
GGAACACTTGTGCTTCAGGACGCTCCAGCGTTTCACAGCTGCTACTCTTGAGCATGGGAT
GCGTCCACCCATTTCACCAAAGCCAGAGTGGCGAGCTCTTCTCGATGAGATGGCTGTGGT
GGCAACTGAAGAATATAGGTCAATTGTCTTCCAAGAACCACGCTTCGTCGAGTATTTCCG
CCTTGCGACACCAGAGACGGAGTATGGCAGGATGAATATTGGAAGCAGGCCATCCAAGAG
AAAGCCAAGTGGTGGCATTGAATCACTCCGTGCAATCCCATGGATCTTTGCATGGACGCA
GACACGGTTCCACCTCCCGGTCTGGCTGGGCTTTGGCGGTGCCTTCAAGCATATCCTCAA
GAAGGACATCAGGAATTTCCACATGCTCCAGGAGATGTACAACGAATGGCCGTTCTTCAG
GGTCACCATCGATCTTGTTGAGATGGTGTTCGCCAAGGGTAACCCTGGCATTGCTGCCTT
GTACGACAGGCTCCTTGTTTCAGAGGGGCTACAGCCACTGGGTGAGAAGCTGAGGGCCAA
CTATGAGGAGACCCAGAAGCTGCTTCTTCAGGTTGCTGGGCACAAGGATCTTCTTGAAGG
TGATCCCTACCTGAAGCAGCGTCTCCGCCTCCGTGATGCATACATCACCACCATGAACGT
CTGCCAAGCATACACATTGAAGAGGATCCGTGACCCAGACTACCATGTTGCATTGCGCCC
CCATCTGTCCAAGGAGGTGATGGACACGAGCAAGCCGGCTGCCGAGCTCGTGACGCTGAA
CCCGGCGAGTGAGTACGCGCCGGGGCTGGAGGATACCCTCATCTTAACCATGAAGGGAAT
TGCTGCCGGTTTGCAGAACACCGGTTAGGGCAAGGGGAGATTGCTGGATCATCTTCATTT
TGTACCTTGATGAGATATTTCCTTTTATCGAGGGCCGTGGGCCTTGCTTGTATCTTGCGG
ATGTAGCTGCTACATCTGCCCCTCTACCCAGTGAGGAATAATGGCATTTCGCAAGTATAA
TATAATATTTATAAATAAAGGCAAACGATGATAATTTCTAATCAAAAAAAAAAAAATACT
TGGAACACTTAACAATGTACTGGATTGGGCGTTTATACTGTTTCCAGTGTCTGAATATTA
TTAGAATGTCAATCAGTTAAATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g14670.1	976	protein\|phosphoenolpyruvate carboxylase, putative, expressed
Brachypodium v1_2	Bradi4g27910.1	969
Arabidopsis v10	AT1G53310.1	967	\| Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 \| phosphoenolpyruvate carboxylase 1 \| chr1:19884261-19888070 REVERSE LENGTH=967