barSeed - Barley Seed Development Database

Probe CUST_41865_PI390587928

Source Contig U35_1122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41865_PI390587928	Hv_44K_v2	AATGTCTTTAAACGTTTCACTACCAACCCTATGTACTTCCATCATAACTGCCACGCTTTG	847	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.023	1.779	1.134	0.766	0.253	0.223
Raw	513.016	714.212	390.461	426.585	48.267	46.926

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39325.1	1171	1e-23	990 - 1047	100	58 / 58	plus
Harvest21	ABC00192	947	3e-25	843 - 902	100	60 / 60	plus	ABC00192
Harvest35	U35_1122	952	3e-25	848 - 907	100	60 / 60	plus

Contig Sequence (952 bp)

>U35_1122 952 Hv_44K_v2
AGCCTCCCGTCCCAACCCCTATCCGTTCCTCCACTCCTGGTCTCTCCCGCTCCTATCCTC
TCCTTCCCCCTCGCGCCGCCGCCGGCGCCGACGCCGACGCCGCGGCTTCCGCTCCTCCCC
CAGCCAAGATGAATGTAGAAAAGCTCAAGAAAATGGCAGGTGCCGTGCGCACCGGGGGGA
AGGGTAGCATGCGCAGGAAGAAGAAGGCTGTACACAAGACCACAACTACAGATGACAAAA
GGCTCCAGAGTACCCTGAAAAGAGTAGGAGTGAACACCATCCCTGGTATCGAAGAGGTCA
ACATCTTTAAGGATGATGTGGTTATTCAGTTTCTGAATCCTAAAGTGCAAGCTTCAATTG
GCGCTAATACATGGGTGGTCAGTGGAACTCCACAGACAAAGAAACTGCAAGATCTGCTGC
CATCAATTATCAATCAACTTGGTCCTGACAACTTGGACAACCTCCGGAGGCTTGCAGAGC
AATTCCAAAAGCAGGTCCCTGGTGGTGCCGCTGGCATCGAGGCTGGTGCCAGTGCAGGTG
CTGCTCAGGCTGACGACGATGATGATGTCCCTGAGCTTGTCCCTGGAGAGACATTTGAAG
AGGCCGCAGAAGAGAAAAAGGCAGAAGAGAAAAAGGCAGAGTCGTGATTTTGATGCATGT
TTACTGTTGTGAAGGGTTATATGTTAAGCGGCGTCATTAGAGACCTCTCCCCTTTCGAGA
ACTCTGACCTACCTTATTTGTGCCAGTGGTCCGGTTTTGTCATGTACGTCAGTTTCGTAT
GAGATGTTGGTGGAATTTTGCATCAAATTACATGCCTCTTTTGGTTGCCCTCAAAAAAAA
AAAAAAAAATGTCTTTAAACGTTTCACTACCAACCCTATGTACTTCCATCATAACTGCCA
CGCTTTGCCCATGGATCTGCGATTTGATCGCTGGAGGTAAAAAAAAAAAAAA

Homology of Contig U35_1122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34180.2	165	1e-81	protein\|transcription factor BTF3, putative, expressed
Brachypodium v1_2	Bradi3g29087.1	173	3e-85
Arabidopsis v10	AT1G73230.1	165	1e-71	Nascent polypeptide-associated complex NAC \| chr1:27540506-27541364 REVERSE LENGTH=165