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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41864_PI390587928Hv_44K_v2GATCCACCGACCAGTTGTGAGTTACTACTCTTAATTCATATATGCAAATGAAAACTGATT752GeneList: greenyellow
MasterList: Thioredoxin_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 7.2945.1901.3630.6900.1760.284
Raw 292.652347.60175.11564.4334.7329.249



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35944131583e-213102 - 315510054 / 54plus ABC03171 ABC15209
JLOC1JLOC1_35317.114088e-25818 - 87710060 / 60plus
Harvest21ABC031718403e-25753 - 81210060 / 60plusABC03171
Harvest35U35_11238403e-25753 - 81210060 / 60plus



Contig Sequence (840 bp)

>U35_1123 840 Hv_44K_v2
GGAATTCGGACGAGGAGCCTCCTCCCTCACACACTACACCATTCACATCTTTTTCCTCTC
CTCTCTCCGGGATACTGGCACAGGAACCAGCTTCTTTTTTCTCTTGGTTTTTCCCTGTCT
CCGTGACCAGCAATGGCCTTGGAGACATGCCTTAGAGTCTGGGCCCTTCACGCCCCCCAG
ACCGGCATCAGGGAAAGGCTTAGCAGCGGCAGCTATGCGCCATCCAGGCCAAGGACCGCC
GCCCCCGCCGTTGTCTTGCCGTCCCCGTACCCGTTCGCTCCGGTGGCAGCACAGCGGCCG
TCTCGCTTCGTTTGCAAGTGCAAGAACGTCGTCGACGAAGTGATTGTGGCGGACGAGAAG
AATTGGGACAACATGGTGATCGCGTGCGAGTCGCCGGTGCTGGTGGAGTTCTGGGCGCCG
TGGTGCGGCCCGTGCCGTATGATTGCGCCGGTGATAGACGAACTGGCAAAGGACTACATG
GGGAAGATAAAGTGCTGCAAGGTGAACACGGACGACTGCCCAAATATCGCATCAACCTAC
GGCATCCGGAGCATCCCCACCGTCCTCATGTTCAAGGACGGCGAGAAGAAGGAGAGCGTC
ATCGGCGCCGTCCCGAAGACCACCCTCTGCACCATCATCGACAAGTACATCGGCAGCTAA
TTGATCTTAATTAGCGATTAATCGAGGACGCACACACCCTTTCTGTTCTGTTCCTCAGAC
AATATATATGTATCTATATGATGTACGTATACGATCCACCGACCAGTTGTGAGTTACTAC
TCTTAATTCATATATGCAAATGAAAACTGATTTATTTGGGTGCAAAAAAAAAAAAAAAAA



Homology of Contig U35_1123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g08730.11733e-81protein|thioredoxin, putative, expressed
Brachypodium v1_2Bradi4g40800.11823e-98
Arabidopsis v10None