barSeed - Barley Seed Development Database

Probe CUST_41843_PI390587928

Source Contig U35_1144

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41843_PI390587928	Hv_44K_v2	GCAGTGAATGTTAAATCTCTGTGTAAAACTCTGTTAGAAATAAAGCAAACTATCTCGGTG	692	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5772.1	782	2e-24	708 - 767	100	60 / 60	plus	ABC03461 ABC37907 ABC37949
JLOC1	JLOC1_3733.1	960	8e-25	743 - 802	100	60 / 60	plus
Harvest21	ABC03461	590	3e-25	511 - 570	100	60 / 60	plus	ABC03461
Harvest35	U35_1144	780	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (780 bp)

>U35_1144 780 Hv_44K_v2
GAGTTCTCCACACGTGAGACGTGCGCCAAGCGTACAGCGCGGTCGTCGGGTGTACGCGCT
CCCCTCGCTCATTGATCACGCCCTCCCCGCGCCCACCAGCACAGCGCCCTCACCGCCCGC
CGCTCCCCTGCCCTTTCCCTCCGGCTGTATAAATACGAGGCGCTCGTGGTGGAGATGGGT
ACCGCCTTTTCCTCCTCCTCCTCTTCCACCCCAGAGTCCAGAGCTATGGCGCTCGCCAAG
GCCAAGGAGATCGTCGCCTCCGCTCCCGTCGTCGTCTTCAGCAAGTCTTACTGCCCTTTC
TGCGTACAAGTGAAGAAACTGTTCACGCAGCTAGGAGCGAGTTTCAAGGCCATTGAGTTG
GACACTGAGAGTGATGGACCTGAGATGCAGTCAGCTCTTGCAGAATGGACTGGGCAGAGG
ACTGTCCCCAATGTCTTCATCAATGGAAAACACATCGGTGGCTGTGATGACACTCTTGCA
CTGAACAAGGGAGGGAAGCTGGTTGCTCTGCTGACGGAGGCTGGAGCGATCTCCGGTTCT
ACTTCGAAGGCCACCACCGCTGCTTAGCTCTGTTTGCGAGTTGTCGTGGTCGATGTTATT
AGTGTGTTGCATGATTTACATCGTCCCCGTGTCATGAAATAACCAAGGTTGATGTTTGGC
AAGTTCAGGGCTTGTTGCTGTCTAGTATGTCCGCAGTGAATGTTAAATCTCTGTGTAAAA
CTCTGTTAGAAATAAAGCAAACTATCTCGGTGATATCATCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42930.1	128	6e-58	protein\|OsGrx_C2.2 - glutaredoxin subgroup I, expressed
Brachypodium v1_2	Bradi5g15220.1	129	2e-62
Arabidopsis v10	None