barSeed - Barley Seed Development Database

Probe CUST_41839_PI390587928

Source Contig U35_12027

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41839_PI390587928	Hv_44K_v2	TCTTTTGGCATATGTCAAATTCTTTTGGGGTTTGGCTACAAGCTGTCTGTTGAAAAGAGA	735	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.454	2.721	1.197	0.711	0.265	0.368
Raw	2062.890	3492.433	1377.863	1306.488	171.439	253.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_12027	833	3e-25	736 - 795	100	60 / 60	plus

Contig Sequence (833 bp)

>U35_12027 833 Hv_44K_v2
GTGAATCTCGAGGTTGATCAAATAATAAAGGCTTACCAGAATATGGGTCAGGGGCCACCT
CCAAAGATTACAGTTATTATTGCTCAAAAGAATCACCACACGAAACTGTTCCAAGCTGAT
GCACCAGATAATGTTCCAGCTGGGACTGTAGTGGACTCGGGTATTGTTCATCCGAAACAG
TATGATTTCTACATGTGTGCTCATGCGGGACCTATAGGCACCTCAAGGCCCACCCATTAT
CATGTCTTGCTTGATCAGATTGGTTTCACACCAGATGAACTCCAGAAACTAGTTCTTTCG
CTTTCCTATGTGTACCAGAGGAGCACCACTGCAATATCTGTGGTGGCACCTATCTGTTAC
GCGCACCTTGCAGCAGCGCAGATGAGCCAGTTCATAAAATTCGAGGAGTTTGCTGATACT
TCATCTGGGAGTGGTGTCCCTTCGTCATCAACAGCAGCAACAGTCCCGGAACTGCCACGG
CTGCATTCTGACGTCTGCAGTTCGATGTTCTTTTGTTGACGTGGGCTTTTAGTCAGGTCG
TTGTGCAGCAGGGTTGACTTTTTGTGAGTGAAGAAACCTGATATTGGACAGGTGACAGCA
GGTTTGGCTGGGAGAAAGTTTTTGGATGATATAGTGTCCGTGGTTAGGATAGTAGTAGCA
GTTGACACTTGATCGCCAGAGAAGGCTTATGGATGTGAATTCCAGATTCAAACCTTGCTC
CATTTGTAGGCACGTTCTTTTGGCATATGTCAAATTCTTTTGGGGTTTGGCTACAAGCTG
TCTGTTGAAAAGAGAGCGGCCGCTCGAGCATTTTCGAAGNGGCCCAATTCGCC

Homology of Contig U35_12027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16224.1	364	4e-91	protein\|piwi domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g08587.1	883	8e-93
Arabidopsis v10	AT2G32940.1	878	7e-69	\| Symbols: AGO6 \| Argonaute family protein \| chr2:13972218-13976856 REVERSE LENGTH=878