barSeed - Barley Seed Development Database

Probe CUST_41830_PI390587928

Source Contig U35_24003

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41830_PI390587928	Hv_44K_v2	TGTGAGTTAGAAGTTAGGACACAACACTAGTGCCCACCGTTCATAGTGTATTTGCACAAA	544	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.727	1.534	1.078	1.006	0.314	0.269
Raw	41.691	55.865	36.664	44.286	4.260	3.831

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15577.1	677	3e-22	622 - 677	100	56 / 56	plus	ABC20856
MLOC	MLOC_15577.2	683	3e-22	628 - 683	100	56 / 56	plus	ABC20856
Harvest21	ABC20856	618	3e-25	545 - 604	100	60 / 60	plus	ABC20856
Harvest35	U35_24003	618	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_24003 618 Hv_44K_v2
CGGGGAGGTGGAGGGGATGAAGGACTTCGCGCTGATCCGCCAGGCCCGGCTGTCGGTGAT
GCCCGTGCCGGTGGCGGTCTGGGACTGGATTTGTGAGACGGGTGGTGGCTTTGTGGAAGA
CGGTGAGGTGGGAGACGACGAAGCTTCTTCTGGTTGATGATGCTCTGAACTCTGAAGATG
CAGGTGACATATGCAGTTGGAAGCATCATTTTGCGGTGTCTTTTGCCCTGCAACTGCGTG
AGATGGCATTTCAGAGGAGCATTTCAGTGACATTTTGTGTATCCTCATCTAGCGTTTGCC
GTCTCTGCACCGTGGTGTGACCAAGCGTGTATCCTCTACCTAGTCGATGTTGCCATGTCG
CAAGAACAGTTGTTATCGTAGGGGGGCTTTGAGATCTATCAAGAAGTCGAATGCTGTTCT
TTGTGGCTGTATGGATATGCTGCTCACTGAATTTTCGAGCAGGTGGTTTCATTCTTTTTA
TGTCATGGCACTCATTTATGGTTTCATCCTACGATTCATCATCTGTAGGATGCAGGCAGA
ATCCTGTGAGTTAGAAGTTAGGACACAACACTAGTGCCCACCGTTCATAGTGTATTTGCA
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_24003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None