barSeed - Barley Seed Development Database

Probe CUST_4182_PI390587928

Source Contig U35_2400

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4182_PI390587928	Hv_44K_v2	AGCAATAATAACAAGCCAAGCATGAAAACTCTATCAAGGCCTGAGTCCCAGTCAAAGCCC	694	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.756	0.896	1.526	1.680	0.875	0.783
Raw	154.112	280.204	426.839	724.231	137.131	133.548

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37761.1	1180	2e-24	569 - 628	100	60 / 60	plus	ABC06626 ABC07496 ABC26233 ABC48078
JLOC1	JLOC1_24487.2	1372	8e-25	600 - 659	100	60 / 60	plus
JLOC1	JLOC1_24487.1	1293	8e-25	521 - 580	100	60 / 60	plus
Harvest21	ABC06626	1328	3e-25	649 - 708	100	60 / 60	plus	ABC06626
Harvest35	U35_2400	1374	3e-25	695 - 754	100	60 / 60	plus

Contig Sequence (1374 bp)

>U35_2400 1374 Hv_44K_v2
ACTTTGTTGCTGCTGCTGCCGCAAGCCCAAAAGGCACCGCCGGGGCTCAAATCCTCCCGG
AAACGAACGCAAATCTCCTCTTCCCAAAATAAAAACCTCACCACTCCTTGTCTGTCTCCC
TCTCTCTGTGTCCTCCACCTCCTCGTGCTCTCGCCTCCCTCCCAGCACCCTTCTCGCCGC
CGCCGCCGCCGCCCCCTCGCCGGAACCCTAAATGGACGTCGGCGCCGGCGCCGGCGCGCC
CTACGCCTCCCGCACGGCGGAGGAGGTCTTCCGCGACTTCCGCGGCCGCCGCGCCGGCAT
GATCAAGGCCCTCACCCAAGAAGTGGACAAGTTCTACCAGCTCTGCGACCCCGAAAAGGA
GAACTTGTGCCTTTATGGGTACCCTAATGAAACATGGGAAGTGACGTTGCCAGCTGAGGA
AGTCCCCCCAGAGATTCCTGAACCAGCACTTGGAATCAACTTTGCTAGGGATGGCATGAA
CGAGAAGGATTGGTTAGCACTAGTTGCTGTTCACAGTGATTCCTGGTTGTTGGCTGTTTC
ATTCTACTTCGCGGCACGGTTTGGATTTGACAAAGAGGCAAGGAGGCGTCTCTTTAACAT
GATAAATAACCTGCCTACAATATTTGAAGTCGTGACTGGTGCTGCAAAGAAGCAGACCAA
GGAGAAGGCCCCCAACACCAACACTACGCACAAGAGCAATAATAACAAGCCAAGCATGAA
AACTCTATCAAGGCCTGAGTCCCAGTCAAAGCCCCCAAAGATGGCAGCGCCCCCAAAGGA
TGAAGACGAGAGCGGCGAGGACTATGGAGAAGAAGAGGAGGAAGAGCGCGACAACACCTT
GTGTGGTACCTGTGGAACAAACGGCGGTAAGGATGAGTTCTGGATTTGCTGCGACAACTG
CGAGCGTTGGTATCATGGGAAATGCGTCAAGATCACGCCTGCTCGAGCCGAGCACATCAA
GCACTACAAGTGCCCAGACTGCAGCAACAAGAGGGCGAGGGTGTAACGGCGACAAAAAGC
ACCAGCAAGGCTGCAGGACTCGGAATGGAACTAGCACCAGCACCAAATCGTCGACGTCCG
CCGCAGCCTGCAGATATGGCCTAGCATTTCTAGCTCATAGACTCGCTTTTCGTTTCAGTG
GAACCCTGCAGTTCGTTCATGTTGGTCCGACTCTTGACTTGTGTGTGTTTTAAACCGTTG
GTTGGTTGGTGTAGTAGTGTTGTACCAGCTTCGATCTCTTCAGCGGACATGTCAAAGACG
TTCTTCAACTGAAAGGACCCGAAAGCTGACACCATTGTTTCTGTCCATGTTAGCCTTGTC
TTGTTCCTGGGCATATATATATCCATCTTGCTGGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2400 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34640.1	259	4e-124	protein\|PHD finger protein, putative, expressed
Brachypodium v1_2	Bradi2g25120.1	261	3e-132
Arabidopsis v10	AT5G26210.1	255	8e-94	\| Symbols: AL4 \| alfin-like 4 \| chr5:9158566-9160221 REVERSE LENGTH=255