barSeed - Barley Seed Development Database

Probe CUST_41822_PI390587928

Source Contig U35_24008

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41822_PI390587928	Hv_44K_v2	ATTGTGACGGCCAACGCAATGCACAGCGAGCCAAGAACAGAGCGCGCGGTCGAGGGAAAC	57	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375769	1235	2e-24	71 - 130	100	60 / 60	minus	ABC46289
MLOC	MLOC_35834.1	674	2e-24	108 - 167	100	60 / 60	minus	None
JLOC1	JLOC1_23091.1	661	8e-25	108 - 167	100	60 / 60	minus
Harvest21	ABC18679	370	3e-25	58 - 117	100	60 / 60	minus
Harvest35	U35_24008	370	3e-25	58 - 117	100	60 / 60	minus

Contig Sequence (370 bp)

>U35_24008 370 Hv_44K_v2
GCCACCACCACTCGTTCCATACGCCCAGCGAACCACGAGCGAGCTCGGCCGCCGCCGGTT
TCCCTCGACCGCGCGCTCTGTTCTTGGCTCGCTGTGCATTGCGTTGGCCGTCACAATGGC
CACGGCATGGGTGCGGTCCCTGAGCTGCAGGTCGTACGGCGTGGCGGACGCCGTCGTCGC
GCCGTCCCCGAGCAAGAAGGCGCAGCCGCTTCTCCCCGTCTCGTGCGGCGCCGCGGCGGA
CGTGCGGGACTCGGTGGCGTCCGCGCGGCAGGCGTGGAAGCAGCAGAAGCCGCGCCGGGA
GCGGCGGACGGACGGGCCGCGGGAGAGGCAGCAGGAGACAGCGAGGCCGCGGCCCAAGAA
GAAGCCCAAG

Homology of Contig U35_24008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None