- Probe CUST_41820_PI390587928
- Source Contig U35_39971
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41820_PI390587928 | Hv_44K_v2 | GTGCTACTGTATTATCCGTATATGCAAAGATCGATTAGCTAGCTAGCTACGATGTTTTTT | 305 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.105 | 0.083 | 0.309 | 2.947 | 3.063 | 6.111 |
| Raw | 3.999 | 3.201 | 22.474 | 320.875 | 119.535 | 259.261 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK371240 | 676 | 2e-24 | 448 - 507 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_67155.1 | 873 | 2e-24 | 570 - 629 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_44304.1 | 870 | 8e-25 | 581 - 640 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC36241 | 417 | 3e-25 | 306 - 365 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39971 | 417 | 3e-25 | 306 - 365 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33570 | 304 | 3e-25 | 52 - 111 | 100 | 60 / 60 | plus |
Contig Sequence (417 bp)
>U35_39971 417 Hv_44K_v2 GCGGGGACAGGGAGCAGCAGGGCGCGGGATGCGGGGGTGCGCGCCGCTTCCAGATGCCGC TGCACTACCCGAGGTACACCAGGGAGAACTACGAGGCCATGCCCGAGTGGCAGCTCGACC GCCTCCTCTCTGACTACGGCCTCCCCGTCCACGGCAGCGTCCACCACAAGCGCAGCTTCG CCATGGGCGCCTTCCTCTGGGGCGCTGGCAACTGATCTGCCTGTCGGCCGTGCGCCTAAT CTTCTCCCTCGACCATGGAGCAGCTCATGACTCACGTACGGTCGGTGGGCCGAGAGATGA TGTGCGTGCTACTGTATTATCCGTATATGCAAAGATCGATTAGCTAGCTAGCTACGATGT TTTTTTTTTTTCGATATCGTTTCCATTTGCGTGCTATGACATGGCCTACGTACATGT
Homology of Contig U35_39971 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |