barSeed - Barley Seed Development Database

Probe CUST_41810_PI390587928

Source Contig U35_12032

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41810_PI390587928	Hv_44K_v2	TTGAGAAATTCTGCTGAAATTTTGTTGCAAAGAGTTCCAAGGAGCCACGAGAAGGACTTC	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15470.2	2693	2e-24	2190 - 2249	100	60 / 60	plus	None
MLOC	MLOC_15470.1	3194	2e-24	2215 - 2274	100	60 / 60	plus	None
JLOC1	JLOC1_10615.1	2877	8e-25	2201 - 2260	100	60 / 60	plus
Harvest35	U35_12032	1020	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (1020 bp)

>U35_12032 1020 Hv_44K_v2
CACGCGTCCGTGAAGATCACCATCACCATCACCATCATGATCATGTTCATGAAGATCACC
ATCATGATCATGTTCATCAGAGTGCTGATCACAAGAAGACTTGTTCTGGTCATCATGGAG
AAACAAATAAGATCCATCATCATAGTCACCAACATGATAGTAGCAATGCAGAGAATCATC
ATCAACATAACCATGGCTGTAGCCACAAGCATGGTCACAATGGCCATATGGAACATCACC
ACCAGGGTGTAGATCAGGCTCATCAAGATTGTAGCAGCTTCAGCAGCGAGCAAGGACTTC
TTGAGATTCCACTGATAAATGTGCACTCTCATGGCACAGAATCTCAGTCTGGTAATGGAG
AACTGGAATTGCCAGAAACCGGAAACCATGCCAAGCCGGCAAGCCGGCGTCACATTGACC
ACAACATGGAAGGTATCTTCTTACATGTCCTGGCTGACACAATGGGAAGCGTCGGTGTTG
TGATATCAACCCTACTAATCAAGTATAAGGGATGGCTAATAGCAGATCCCATTTGCTCTG
TATTCATTTCAATAATGATTGTAGCTTCCGTCCTTCCATTGTTGAGAAATTCTGCTGAAA
TTTTGTTGCAAAGAGTTCCAAGGAGCCACGAGAAGGACTTCGAAGCAGCAGTGGATGATG
TTAAGAAGATTAATGGCGTGATTGGAGTCCATAATGTTCATTTATGGAACTTGACAAACA
CCGATATTGTAGGCACTTTTCATCTTCATATATCAGCCGAAGCTGATAAGTCTGTTATAA
GAGAAAGTGCTTCACGGATATTTCAAGAAGCTGGGGTTCAAGATCTGACTATCCAGATTG
AATGTGTCGAAAGATAGCAGTTGTAGGTATAGCGACACTTGTCGGTAGTGTGATAGGATT
TTGGCAGAGAGCAAATATATCTGTAGTGCTTAATGCAGGAACCATCCTTTATGTACCGCT
GAAAGGAAATTGCATTATTAAAATACAGGTTTGCAGCTTAATCAAAAAAAAAAAAAAAAG

Homology of Contig U35_12032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g32650.1	801	8e-110	protein\|cation efflux family protein, putative, expressed
Brachypodium v1_2	Bradi3g36130.1	815	4e-134
Arabidopsis v10	AT2G04620.1	798	3e-66	Cation efflux family protein \| chr2:1610506-1612902 REVERSE LENGTH=798