barSeed - Barley Seed Development Database

Probe CUST_41801_PI390587928

Source Contig U35_24013

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41801_PI390587928	Hv_44K_v2	CCTGAATTAGTGTTGTCTACTGATGTTGCAGTGTTTCTTCAGTTATAAATCCTGAATTTG	534	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.690	1.811	1.205	0.738	0.240	0.241
Raw	891.004	1517.752	859.432	826.638	95.504	105.370

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23196.1	618	2e-24	89 - 148	100	60 / 60	minus	ABC31568
JLOC1	JLOC1_16038.1	537	5e-22	1 - 55	100	55 / 55	minus
Harvest35	U35_24013	646	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_24013 646 Hv_44K_v2
AGACAATGCAAATCTTGAGCCTGACAACAATGCTGAAGTTCGATGNAGCCAACTGNAATT
TTCACAGGACAGCTATACGATGGGAATTTTCACAGGGCAGGCGACTGATTGAAGTCGTCT
CCTTGAATGCACTGCCAGCACCTTGTGCATGAAGAAACATCCGAGTCCCTTTTTGCGAGA
CAATATTAGAGCAATGTGCTGCAAGCATCACCAATTGTGGTTTTCAGCTGTTTGGTGCTG
TGGCTATTTACCTCGGTGAATCCGAGTTGTAACCCGCCAGCTTAACACCTTGGCGCTGTA
TATGAGACGCCCTGTTTATGCACTGATGAATTGCTCTCAGGCATACAAACTGTAAGTTAT
GAAGAAGGCCAGAAGGTGCGATGTTATGTGCTGGTTACTGTTCAGCCCTAGAACTAGCTA
TGCCTGGCAGCATGCGCTTGTAAATTGTAAGGATTAGCTGCCTCATTTTGGGAATCTTGA
ATGAATAGTAAATGATTAGCTGACGTGCTGATGAGTTTTTCTTCAGTTATAAACCCTGAA
TTAGTGTTGTCTACTGATGTTGCAGTGTTTCTTCAGTTATAAATCCTGAATTTGAGTTGT
CTAATGATGTTACAGTATTTCTTCAATTATAAAAAAAAAAAAAAAA

Homology of Contig U35_24013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None