barSeed - Barley Seed Development Database

Probe CUST_417_PI415269222

Source Contig TA39734_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_417_PI415269222	Hv_44K_v2	TCCATCCCCGGTAATTTAGCCCCTCAAAAGGCTTCTCAAACTAGAAGTTAAATAAAAATG	1910	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.200	0.465	1.090	1.836	1.101	1.150
Raw	397.901	1413.697	2979.687	7858.200	1655.110	1857.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57328.2	2150	2e-24	15 - 74	100	60 / 60	minus	ABC10765 ABC47376

Contig Sequence (1970 bp)

>TA39734_4513 1970 Hv_44K_v2
CCCTCACTTTCTCTCGGCCGTCGCTGCCACCGCCCCAACCCGTCACTCTCTTGCCCCCGA
CGGCGATGATGGCGATGGCGACGGCGATGGCCGCCACGTACGGGGCACCGATCCCGGCGC
CGGCACCCTCCGCATCCTCTCCTCGCCGCGCTGCCCCCGATGGCGGGCGGCGGCTGCGGG
CGGTGGCGGGGAGGCCGCGTCCCCTGTTCTCGCCCCGGGCCGTGTCCGACTCGCGCAACT
CCCAGACGTGCCTCGATCCGGACGCCAGCACGAGTGTTCTTGGGATCATCCTGGGTGGTG
GCGCCGGGACAAGGCTGTACCCGCTGACCAAGAAGAGGGCCAAGCCTGCGGTGCCGCTGG
GTGCCAACTACAGGCTCATAGATATCCCGGTCAGCAACTGCCTCAACAGCAATGTGTCCA
AGATCTATGTGCTGACGCAGTTCAACTCCGCGTCGCTCAACCGCCACCTCTCGAGGGCCT
ATGGGAACAACATTGGCGGGTACAAGAATGACGGTTTTGTTGAAGTTCTCGCCGCGCAGC
AGAGCCCGGAGAATCCTAACTGGTTTCAGGGTACCGCAGATGCCGTGCGGCAGTACTTAT
GGCTGTTTGAGGAACACAATGTTATGGAGTTCCTTATTCTGGCTGGAGATCACCTATACC
GTATGGACTACCAAAAATTCATTCAAGCACACAGAGAAACAGATGCTGATATTACTGTGG
CTGCCCTGCCAATGGATGAGGAGCGCGCAACTGCATTTGGCCTGATGAAAATTGACGATG
AAGGGAGAATTGTTGAGTTCTCAGAAAAACCAAAAGGAGAGAAGTTGAAGGCAATGATGG
TTGACACCACCATACTGGGCCTTGATTCTGAGAGGGCCAAGGAATTGCCTTATATTGCTA
GCATGGGAATCTATGTTTTTAGCAAAGATGCGATGCTTCGGCTTCTTCGTGACAATTTTC
CTTCAGCAAATGACTTTGGAAGTGAGGTTATTCCTGGTGCAACAGAAATTGGAATGAGGG
TGCAAGCTTACCTATATGATGGTTACTGGGAAGATATTGGGACTATTGAAGCATTTTACA
ATGCAAACTTGGGAATAACCAAGAAGCCAGTACCAGATTTTAGCTTCTATGACCGTTCTG
CCCCAATTTATACACAATCTCGATACTTGCCTCCTTCGAAGGTCCTTGACGCTGATGTGA
CTGACAGTGTTATCGGTGAAGGTTGCGTTATCAATCATTGTAAAATCAACCATTCTGTTG
TTGGACTACGCTCGTGCATATCGGAAGGCGCAGTAATAGAGGACTCCCTGTTAATGGGTG
CAGACTATTATGAGACAGAAAATGACAAGAAAGTCCTTTCTGAAACTGGCGGCATTCCCA
TCGGTATTGGAAAAAATACACACATCAAAAAAGCAATAATTGACAAAAATGCTCGAATCG
GAGAAAATGTGAAGATAATCAATGTTGATGATATCCAAGAAGCTTCAAGGGAGAGTGATG
GATACTTCATCAAAAGTGGCATTGTCACCGTGATTAAGGACGCCTTAATTCCTAGCGGGA
CAGTCATATAGAGATGCAGCCGTCATCGCCATGTATATAAGTGAGGTTGGCTTGCAGAAT
TACCGTGACCTCCAATGCATCCATGACTGGTTTCCCATGCAGCAAGTTCACCAATCTCTG
CATGGAAGTGTCGTCGGCGGAAAGAATAAAACAGTGGCCACCACTCAAGGCCATAATAAA
ACTGAGAATTGCACTGTTAACTAGTATATGAGCAAATGTTTTGAAGTTGAAGTATGAGAA
TTGCATTAGGTATCTGGATGTTTTGGCATGTACAATTATGTCCTTTTGTACAGTTTCTAC
GCTTGAACTGGACATCCGGTGCTTATTTGCATCGCTTAGAGCATCTCTAGTCCATCCCCG
GTAATTTAGCCCCTCAAAAGGCTTCTCAAACTAGAAGTTAAATAAAAATG

Homology of Contig TA39734_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g12660.2	501	protein\|glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g27570.1	509
Arabidopsis v10	AT5G48300.1	520	\| Symbols: ADG1, APS1 \| ADP glucose pyrophosphorylase 1 \| chr5:19570326-19572557 FORWARD LENGTH=520