- Probe CUST_417_PI390587928
- Source Contig U35_38399
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_417_PI390587928 | Hv_44K_v2 | ATCAGTTTCGTGAATGTGCTACTTCAAGTGATCTACTACACAATCTGCACAGTCCAGCCC | 415 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.618 | 0.929 | 1.984 | 2.166 | 0.953 | 0.867 |
| Raw | 15.780 | 38.132 | 69.455 | 121.419 | 18.447 | 18.382 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375151 | 2573 | 2e-24 | 1895 - 1954 | 100 | 60 / 60 | plus | None |
| MLOC | AK364972 | 2573 | 2e-24 | 1947 - 2006 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44328.3 | 3628 | 2e-24 | 2788 - 2847 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44328.2 | 2352 | 2e-24 | 1442 - 1501 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44328.1 | 2281 | 2e-24 | 1461 - 1520 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44328.4 | 751 | 6e-24 | 1 - 59 | 100 | 59 / 59 | plus | None |
| JLOC1 | JLOC1_28720.1 | 2370 | 8e-25 | 1460 - 1519 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34358 | 665 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38399 | 665 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (665 bp)
>U35_38399 665 Hv_44K_v2 GAAAATTCCGTTGCTAGCGACTTGCACTGCTTTGAGTTGGACATGCATGGAGACGCTGTG CAGACTCATGAGCTCGCAGGAACTCGACGAACAGTCGCCGACTGCATGTATTCACCAATG AGAAGACTGGAGTTCTCCGATGGTGTGTTTGTTGAGGGCTCAAGGATCTCAACCGCAAGG CCTCGTTCAGAAAAAGGCAAGGTGAAGCCAAGCAGCAGCAAAGCACAGCTGAATACTTCG ACACCAGAAATCAGCTCTCGCAACTGCGACAAGATCGATCCCATAGATGAGCAGAATGAA ACGGTCATGACCCAAGTTTCTCGGCGGTTGCACGATGACCTGCTGAAGATCAAATCAGAG GCTCCTCAACATGCATTTCTAGAGCGAAAGCCCCACGACCATCATCCCCGGACGTATCAG TTTCGTGAATGTGCTACTTCAAGTGATCTACTACACAATCTGCACAGTCCAGCCCGGCAG CTGAAGAATCATCAACGCGCGTCGTTAGACTACCAAAGATCTGAATGTGCCACCACAGGT GACCTACTCGGGCTGCGCAGTCCATCCTGGCAGCTGAAGAATCAGCGCGCGTCCTTAGAC TATCAGATGTCTGAATGTGCCACCACAGGTGACATGCACAACCTGCGCAGTCCATCACGG CAGCA
Homology of Contig U35_38399 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g31190.1 | 698 | 1e-64 | protein|intracellular protein transport protein USO1-related, putative, expressed |
| Brachypodium v1_2 | Bradi1g39247.1 | 763 | 2e-105 | |
| Arabidopsis v10 | None |