barSeed - Barley Seed Development Database

Probe CUST_41798_PI390587928

Source Contig U35_24017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41798_PI390587928	Hv_44K_v2	TAACAACGAGAAGGCTGAGTTTGAGCAAGCTTCCTTTACAAAGTTCGTGGCCGTTCTGAA	496	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.097	1.083	1.184	1.054	0.414	0.493
Raw	102.978	168.393	151.983	221.192	29.385	38.055

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372381	1124	2e-24	571 - 630	100	60 / 60	plus	None
MLOC	MLOC_58327.1	744	2e-24	604 - 663	100	60 / 60	minus	None
JLOC1	JLOC1_37884.2	9877	8e-25	222 - 281	100	60 / 60	plus
JLOC1	JLOC1_37884.1	9893	8e-25	222 - 281	100	60 / 60	plus
Harvest21	ABC19005	760	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_24017	760	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_24017 760 Hv_44K_v2
CGCCGAGGCACAGCTGCGCGAAGCTCTCGGTGGCGGTCGAGGACCCCAAGGCGCCGGGCG
GCGGCGGCATATTCGTGAAGGCCACGTGGCTCCCCACCCGCTTCTCCCTCGCCGTCACCG
ACGGCGCCGGCGCCTGGGTCGCCGACGCCTCCGACGCCGAGGTGCGCCTCCGGGCCGAGC
AGTGGGACCAGCCCGTCTCCGAGTACCTCGCCCTCGCCGAGCGCTACCTCGCCTTCCACC
AGCCCTCCTCCACCTACTCCTTCCACGAGGCTGGCGCCGGCCGCAGGTTGTCATGGACAT
TCGAAAAACAAGGCACAAAGCTGGAATGGCGTTGGAAACTGCAGCCGGCACCCCACCCAC
AACAGACTATAGCTGATGTCTTGGATTTCCTTATGGATGCAAATATACGCTTGAGTGAAG
AGGTTGTTAGGAAGACGCAATCATTTGAGAAGCTCAAACAAGAAGCTGAGAATTGCTTGC
AACAGAGTGACAGATTTAACAACGAGAAGGCTGAGTTTGAGCAAGCTTCCTTTACAAAGT
TCGTGGCCGTTCTGAACTCGAAGAAGGCCAAGCTGAGACAGCTCAAGGACAAGATCGCGG
CGCTCGAGTCCGCCGACAAGGCCCCGAAGGAGGAGGAGGAGGAGGAGGAAGGCAACTCGA
CCGACAGGACAGAGCCTATCGAGGAAGGGAGCGACAAGGACCAAAGCGTGAACGACGAGC
CCTCGGAGACGGGCAGCGGCGGCGACACCCACAGCTCCCC

Homology of Contig U35_24017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53000.1	275	1e-143	protein\|XRCC4, putative, expressed
Brachypodium v1_2	Bradi1g09187.1	277	2e-151
Arabidopsis v10	AT3G23100.1	264	3e-79	\| Symbols: XRCC4 \| homolog of human DNA ligase iv-binding protein XRCC4 \| chr3:8220721-8221991 FORWARD LENGTH=264