barSeed - Barley Seed Development Database

Probe CUST_4178_PI390587928

Source Contig U35_2404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4178_PI390587928	Hv_44K_v2	TTTGTGTTGATCAGAAGGGTCTCCTTTATGACATGTTGAGGACACTCAAGGACTGCAACA	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366010	2153	2e-24	960 - 1019	100	60 / 60	plus	ABC15278 ABC45458
MLOC	AK365646	2281	2e-24	799 - 858	100	60 / 60	plus	ABC07365
MLOC	MLOC_15704.1	2021	2e-24	1276 - 1335	100	60 / 60	minus	ABC15278 ABC45458
JLOC1	JLOC1_10790.1	2155	8e-25	689 - 748	100	60 / 60	plus
Harvest21	ABC12477	1304	3e-25	629 - 688	100	60 / 60	plus
Harvest35	U35_2404	1134	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (1134 bp)

>U35_2404 1134 Hv_44K_v2
TGCCATGTGCCCTTCCTCGTACGCCATCCCGTTCTACCCTGAAATCACCGAGCCTGGCCC
CCCGCAGTTCTACCTCCTCAAGCTCTTCTTGACCGACCGGAGGGGGCTGTTGCACGATGT
TACACACATACTGTCGGAGCTGGAGTTTATAATCCAGAGAGTGAAGGTGTCGACCACGCC
TGACGGGAGAGTTGTGAACCTCTTCTTTATCACTGATGGCATGGAACTGTTGCATACAAA
GGAAAGGCAAGAAGAGATTTGCTCGATGCTGATTGCTACCTTAGGTCCTTCCCTAACCTG
TGAAATCCTATCAGCGGAAGGGTTCCAGCAAGGATTCTCTTCTCTTCCACCAACAATCTC
TGAGGAACTGTTCAGGTTGGAACTAGATGATTGTGAGAGCAGTTCAAGACCTCTTTGTGC
AGAGATGAAGAAGGTGCAGAAGGCCACCATTAACTTTGACAATTCCCTCAGTCCTGCACA
CACACTGCTCCAAATTCTTTGTGTTGATCAGAAGGGTCTCCTTTATGACATGTTGAGGAC
ACTCAAGGACTGCAACATTAAGGTCACTTATGGGCGATTCTGGTCAGACAAGAAAGGTTT
TCGAGAGGTGGATCTTTTTATCAAGCAAGCAGATGGCAAGAAGGTTATTGATCCTGAGAA
ACAGGATGCTCTGCGGTCTCGCATGAGGTCCGAAATGCTCCATCCTCTTAGGGTGATGAT
TGTGAACCGTGGACCTGATACAGAACTCCTTGTTGCCAACCCTGTTGAACTATCCGGGAA
GGGCCGGCCACGGGTGTTCTATGATGCTACTTTGGCCCTGAAAGCGCTTGGAATCTGCAT
TTTCTCTGCAGAAATCGGGAGACAGGCAGCGTCGGAGCGCCAATGGGAGGTCTACCGATT
CCTCCTGGATGACAGCAAAGAATTTCCCTTGTCAAACAGCCTAACTCATAGGAACCGTGT
TGTTGATAGAGTGAGGAAAACATTGATGGGCTGTTTCAACTGAAGACTCTGTTGTTGTAT
CTCCATGAATCAAAAGCTTAAGAACGAATGGCTGCTACGGTAGGCATCCAATGTATCGAG
TTAGTTAACCTACTGAATGCTAAAGCCTGAAGATGATCAAAAAAAAAAAAAAAA

Homology of Contig U35_2404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02220.4	335	0.0	protein\|ACT domain containing protein, expressed
Brachypodium v1_2	Bradi2g37240.1	335	0.0
Arabidopsis v10	AT2G39570.1	411	5e-127	ACT domain-containing protein \| chr2:16507963-16509741 FORWARD LENGTH=411