barSeed - Barley Seed Development Database

Probe CUST_41784_PI390587928

Source Contig U35_12047

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41784_PI390587928	Hv_44K_v2	TCGCAAGATCAACAAGGTCAATCGATCATTAAAGAAGATCCAGACTGTCATTAACTCAGT	930	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37423.1	3855	2e-24	2463 - 2522	100	60 / 60	plus	ABC23391
JLOC1	JLOC1_24236.1	3780	8e-25	2300 - 2359	100	60 / 60	plus
Harvest21	ABC22225	990	3e-25	931 - 990	100	60 / 60	plus
Harvest35	U35_12047	990	3e-25	931 - 990	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_12047 990 Hv_44K_v2
CAAGAGAGAATCAGTATGCGATCAGAAGGTTTATTCAGCAAATCAGAAAGCCGCTTTCAC
TGAGATTTTGGACGTTCTAAGAGCCATTTGCCATGCACACATGCTTCCGTTGGCCCTTAC
ATGGGTGCCTTCATCAAATGGCAATGATGGTGGTCATGTTGGACATGATAGTGTTCTTGA
TTCTCAGTCAGGAAAAGCGATACTCCACATTCATGAATCAGCGTGTTATGTTAATGATGC
AAAAATGCAAGGATTTTTTCATGCATGCACTGAAACTCACCTTGAGAAAGGGCAAGGTAT
TGCAGGCCGAGCACTCAAGTCCAATCTGCCGTTCTTCTCTCCTAATATCAGAGAATATGG
AATTAAGGATTACCCACTCGCACACCATGCTCGGAAGTTTGGCCTTCATGCTGCTGTAGC
AATCCGGCTAAGGAGCACATACACCGGTGATGATGACTACATACTAGAATTCTTTCTACC
AATCAACTGCACAGGGAGTGAAGAGCAACAGATGTTATTGAATAACCTCTCTAGCACTAT
GCAAAGAATATGCAAAAGTTTGCGAACAGTTTCTGAAGCAGAGGTTGAAAAAGTTGATGT
TTGTACTGCAGTAATGTATAAGGCAACCAGTGGAAGTTGCTTGCCTACTGGTCAGTCTGA
GAGTTCTTCGCGTGGTGATCAACCAGCCACAGAAGAGGCATTCCAGGATCTATCTTTAAT
TGATAAGCAAGGGGACATGTCCGAGCAGGCACAGTCCAGTACAATGCGGCATGCGGAGAA
AAAACGCAGTACAGCCGAGAAGAATATTGGCATGGATGTTCTTCGTAAGTACTTCTCTGG
TAGCCTAAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCAACAACCTTGAAAAGGATATG
CCGCACGCATGGAATTTCACGATGGCCATCTCGCAAGATCAACAAGGTCAATCGATCATT
AAAGAAGATCCAGACTGTCATTAACTCAGT

Homology of Contig U35_12047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41850.1	937	9e-171	protein\|NIN, putative, expressed
Brachypodium v1_2	Bradi5g23300.1	954	0.0
Arabidopsis v10	AT3G59580.1	894	1e-100	Plant regulator RWP-RK family protein \| chr3:22009652-22012721 FORWARD LENGTH=894