barSeed - Barley Seed Development Database

Probe CUST_41755_PI390587928

Source Contig U35_12052

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41755_PI390587928	Hv_44K_v2	CATAGTAACAGAAGATATTGGCCATAAGATTGTAGAGATTATCGGTGAGTTGGAGGAGGT	380	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372083	2884	2e-24	519 - 578	100	60 / 60	plus	None
MLOC	MLOC_4452.3	4419	2e-24	4035 - 4094	100	60 / 60	minus	ABC11505
MLOC	MLOC_4452.2	4539	2e-24	4203 - 4262	100	60 / 60	minus	ABC11505
MLOC	MLOC_4452.4	2821	2e-24	2452 - 2511	100	60 / 60	minus	None
JLOC1	JLOC1_2771.3	2561	8e-25	271 - 330	100	60 / 60	plus
JLOC1	JLOC1_2771.2	4379	8e-25	271 - 330	100	60 / 60	plus
JLOC1	JLOC1_2771.1	4399	8e-25	271 - 330	100	60 / 60	plus
Harvest21	ABC24139	441	3e-25	381 - 440	100	60 / 60	plus
Harvest35	U35_12052	443	3e-25	381 - 440	100	60 / 60	plus

Contig Sequence (443 bp)

>U35_12052 443 Hv_44K_v2
CCGAGGCATTCCCCCTCGCCCTCTTCGCTCGAGACGATGGTGGAGCTCACGAGGTAGTCA
AGCATGGACGCAATGGAGGTCGAGGAGAGCCCCCTTCTGGCTATTGATGCCAAGTTACAC
GCTGGAATGTGCAGAGTGTTTCATCCTGCAGTTTCTAAACTTCTAGGGATTTTCCCGTTC
ATCGAAGCATCAAGGCCCAGAAGCAAGTCTGGCATACAGGCACTTTGTTCACTGCATGTT
GCTCTGGATAAATCCAAAGGTCTTCTTCAACATTGTGCAGATTGCAGCCGGCTGTACCTG
GCCATCACTGCAGAAACTGTGCATTTGAAGTTTGAGAAATCAAGAAGCCAACTTCAGGAA
AGTCTCAAGCGTGTAGAAAGCATAGTAACAGAAGATATTGGCCATAAGATTGTAGAGATT
ATCGGTGAGTTGGAGGAGGTTGT

Homology of Contig U35_12052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67500.1	801	3e-64	protein\|armadillo/beta-catenin repeat family protein, putative, expressed
Brachypodium v1_2	Bradi2g57817.1	808	1e-67
Arabidopsis v10	None