barSeed - Barley Seed Development Database

Probe CUST_41754_PI390587928

Source Contig U35_12053

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41754_PI390587928	Hv_44K_v2	GGTGTTAACCTTGTCAGTGCTAACCGTGTGGTGATTTTTGATCCAAGTTGGAATCCTGCA	988	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.544	0.968	1.714	1.536	0.818	0.795
Raw	9.602	27.984	41.199	59.947	11.259	11.724

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27993.1	2196	2e-24	1849 - 1908	100	60 / 60	plus	ABC13179
MLOC	MLOC_27993.2	2818	2e-24	1832 - 1891	100	60 / 60	plus	ABC13179 ABC37714
JLOC1	JLOC1_18831.2	2882	8e-25	1832 - 1891	100	60 / 60	plus
JLOC1	JLOC1_18831.1	2609	8e-25	1559 - 1618	100	60 / 60	plus
Harvest21	ABC22206	1048	3e-25	989 - 1048	100	60 / 60	plus
Harvest35	U35_12053	1048	3e-25	989 - 1048	100	60 / 60	plus

Contig Sequence (1048 bp)

>U35_12053 1048 Hv_44K_v2
GCAAGAATGAAAAATCGAAGTTTATACAGCCTGCTTGGGAATTACTACACGAAAACGCTT
TGGTCTCACAGGAACCATAATGCAGAATAAGATAATGGAATTATTTAATGTATTTGACTG
GGTTGTACCTGGTTGTTTGGGGGATCGAGAACACTTCAGAGAATATTATGACGAGCCCTT
AAAACATGGCCAGAGATTAAGTGCTCCTGAGAGATTTGTACAAGTTGCTGATAAGCGCAA
GAAGCACCTTGTTTCTGTTCTAAAGAAATTCCTGTTGAGAAGAACAAAAGAGGAGACTAT
TGGGCATCTCATGCTTGGGAAGGAAGATAATATTGTTTTCTGCAGAATGAGTGATGTTCA
AAAGCGTGTTTATAGAAGAATGCTGCAACAGCCTGACATACAAATCCTTGTAAATAAGGA
TCTCCCCTGTAGCTGTGGAAGTCCTCTGACTCAGGTTGAGTGCTGCAAGAAAATTGAACC
ACGTGGCATTATCTGGTCCTATCTCCATAGAGAGAATCTGGACGGCTGTCCTCTATGCCC
CTTCTGCCTTGTTCTTCCTTGCCTTGTCAAGCTTCAGCAGATTAGTAACCATCTGGAATT
AATAAAGCCCAATCCAAGGGATGAGATTGAGAAGCAGAAGAAAGACGCCGAACTTGCGGC
TGCTGTCTTTGATACAGATATTGAATTAGTTGGCGGTAGTGCTAAAAGTGAGAATTTCAT
GGGTCTCAGTGACTCAGAACACTGTGGAAAGATGCGTGCACTGGAAAGACTTCTGTCTTT
GTGGACTCTACAGGGTGACAAGATTCTTCTTTTCAGCTATTCTGTCAGAATGCTCGACAT
ACTAGAGAAGTTTCTGATAAGGAAGGGCTACTGCTTTTCTCGCTTGGATGGGTCAACACC
CATGAATGCACGCCAATCGCTAGTTGACGAATTCAATAAAAGCCCTAGCAAACAGGTTTT
TCTTATATCTACCCGGGCAGGTAATTTAGGTGTTAACCTTGTCAGTGCTAACCGTGTGGT
GATTTTTGATCCAAGTTGGAATCCTGCA

Homology of Contig U35_12053 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g15890.1	857	0.0	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g14910.1	852	0.0
Arabidopsis v10	AT1G03750.1	862	2e-177	\| Symbols: CHR9 \| switch 2 \| chr1:937920-941068 FORWARD LENGTH=862