barSeed - Barley Seed Development Database

Probe CUST_4174_PI390587928

Source Contig U35_2408

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4174_PI390587928	Hv_44K_v2	GAGATTTGTTCGATGCTGATTGCTACCTTAGGTCCTTCCCTAACCTGTGAAATCCTATCA	697	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366010	2153	2e-24	716 - 775	100	60 / 60	plus	ABC15278 ABC45458
MLOC	AK365646	2281	2e-24	555 - 614	100	60 / 60	plus	ABC07365
MLOC	MLOC_15704.1	2021	7e-23	1520 - 1579	98	59 / 60	minus	ABC15278 ABC45458
JLOC1	JLOC1_10790.1	2155	4e-23	445 - 504	98	59 / 60	plus
Harvest21	ABC12478	930	3e-25	698 - 757	100	60 / 60	plus
Harvest21	ABC12477	1304	3e-25	385 - 444	100	60 / 60	plus
Harvest35	U35_2408	954	3e-25	698 - 757	100	60 / 60	plus
Harvest35	U35_2404	1134	1e-23	254 - 313	98	59 / 60	plus

Contig Sequence (954 bp)

>U35_2408 954 Hv_44K_v2
CAGCACCACACGATACTCCACAGTTCCAACCCACCCCGTCCCACCCCAGCCACGAAACCA
AAGGAGAGGCGCCGAGAAGCGGGCCGGGATCCCAGGCGGGCGGGCGATGCCGATGGCGGG
GAGGTCCTCCACGGGCCGCGGCGGCGGGGGCGGTGGCGGAGGCGGGAGGACGGTGCTGGG
GGGCCGCGGCGGCGGGCCGGGGGCGGAGGACGCCGTGGTGATGGAGCTGGCGGCGGCGGA
CGGCGACGACAGCGTCGTCACCGTCAACTGCCCCGACCAGGCCGGCCTCTGCTGCGACCT
CTGCCGCACCATCCTCGAGTTCGGCCTCCGCATCACCCGCGGCGACGTGTCAACGGACGG
GCAGTGGTGCTACGTGATTTTCTGGGTGGTGCCACGCTCGCCGTCCATCAACGTCTGGTG
GGGGAGCCTCAAGAACCGGCTCATGGCCATGTGCCCTTCCTCGTACGCCATCCCGTTCTA
CCCTGAAATCACCGAGCCTGGGCCCCCGCAGTTCTACCTCCTCAAGCTCTTCTCGACCGA
CCGTAGGGGGCTGTTGCACGATGTTACGCATATACTGTCGGAGCTGGAGTTTATAATCCA
GAGAGTGAAGGTGTCGACCACGCCTGACGGGAGAGTTGTGAACCTCTTCTTTATCACTGA
TGGCATGGAACTGTTGCATACAAAGGAAAGGCAAGAAGAGATTTGTTCGATGCTGATTGC
TACCTTAGGTCCTTCCCTAACCTGTGAAATCCTATCAGCGGAAGGGTTCCAGCAAGGATT
CTCTTCTCTTCCACCAACAATCTCTGAGGAACTGTTCAGGTTGGAACTAGATGATTGTGA
GAGCAGTTCAAGACCTCTTTGTGCAGAGATGAAGAAGGTGCAGAAGGCCACCATTAACTT
TGACAATTCCCTCAGTCCTGCACACACACTGCTCCAAATTCTTTGTGTTGATCA

Homology of Contig U35_2408 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02220.3	444	3e-149	protein\|ACT domain containing protein, expressed
Brachypodium v1_2	Bradi2g37240.1	335	5e-107
Arabidopsis v10	AT2G39570.1	411	2e-80	ACT domain-containing protein \| chr2:16507963-16509741 FORWARD LENGTH=411