barSeed - Barley Seed Development Database

Probe CUST_41749_PI390587928

Source Contig U35_12059

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41749_PI390587928	Hv_44K_v2	TGGCTAGAAAAGTACGCAGGTGGTGCATGAAATGGTCGCTGAATGTGTAGTTGGTAAGTA	622	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.118	1.331	1.310	0.904	0.340	0.300
Raw	2747.260	5223.927	4395.070	4761.147	634.750	603.550

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50426.1	1477	9e-22	83 - 137	100	55 / 55	minus	None
JLOC1	JLOC1_32179.1	1397	5e-22	1239 - 1293	100	55 / 55	plus
Harvest35	U35_12059	725	3e-25	623 - 682	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_12059 725 Hv_44K_v2
TGTGCAGCTACACTACACAAGAAGATATTGCTAACGCTTCATTGTGCAGCGGCCGCTCAC
ACGCGCAAGGGGTTCGAGGAGATGTGCACGCTGTACCCGTACCTAGCGGACCAGGTGAAG
GAGCTGGATGCCGCGAGCCCAGGCATTTTCAAGAGGCAGTTCGGGATGATGGACGACGAC
AAGGCGCGCTCCATGGACGAGAAGATCAAGAAGCAGAGGGTGGCGCAGATGAAGGTGGAG
CTTCGCCGCCACGACCTGGCCAGAGAGGTGACCAAGGCGATCATCGACCTGGTCGACTGA
CGGGACCCTGGTGAGCTTACGAGGTACAACCTGAAACCGTATCTTTGATCGCCTGAAATT
GGTGCGATGGAATGTGGCGATGTGGTGTAGCAAGAAGGTTTCTGAAACCATGAGCTATAA
TCTGCAGATTTAGGCTCGCTCGATGCATGAGACATATGGTGGGACTGCATATTGTGCCTG
GCGTTGTAAGAATGTTTTTTTTGCGTGTGACCAGAGCATCCTAGAATTAGGAAATTAGGG
TGTCTTTATTTATGGTGCAAGCATGATGAGACATGTGCTGGAACTGCAAATTGTGCTTGT
GGATTAAGAATGTTGTCCTGTGTGGCTAGAAAAGTACGCAGGTGGTGCATGAAATGGTCG
CTGAATGTGTAGTTGGTAAGTAGCGGCCGCTCGAGCATCTTCGAAAGGGCCCAATTCGCC
CTATA

Homology of Contig U35_12059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None